CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
cytosol 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005568.1-P	Field mustard	cytosol	100.0	100.0
CDX84731	Canola	cytosol	96.36	96.36
AT1G04760.2	Thale cress	cytosol	92.27	92.27
CDY48531	Canola	cytosol	92.27	92.27
CDY19154	Canola	cytosol	92.27	92.27
CDY59643	Canola	extracellular	30.45	90.54
VIT_05s0136g00290.t01	Wine grape	extracellular	89.09	89.09
CDX86608	Canola	endoplasmic reticulum	88.64	89.04
CDY59642	Canola	endoplasmic reticulum	71.82	88.76
CDY18254	Canola	endoplasmic reticulum	88.18	88.18
Os07t0194000-01	Rice	plasma membrane	88.18	88.18
CDX89793	Canola	endoplasmic reticulum	88.18	88.18
GSMUA_Achr4P22260_001	Banana	cytosol, extracellular	87.73	88.13
CDY15521	Canola	endoplasmic reticulum	87.27	87.67
GSMUA_Achr8P15290_001	Banana	cytosol, endoplasmic reticulum	87.27	87.67
CDX79466	Canola	endoplasmic reticulum	70.0	87.5
CDY19156	Canola	cytosol	57.27	87.5
CDX84702	Canola	endoplasmic reticulum	87.73	86.94
GSMUA_Achr7P01760_001	Banana	plasma membrane	86.36	86.76
CDY17139	Canola	cytosol, extracellular	87.73	86.55
EER96027	Sorghum	extracellular	87.27	86.49
Zm00001d007767_P001	Maize	extracellular	87.27	86.49
CDY06150	Canola	cytosol	86.36	86.36
GSMUA_Achr9P25440_001	Banana	cytosol, vacuole	85.91	86.3
GSMUA_Achr9P11030_001	Banana	cytosol	85.91	86.3
CDY19450	Canola	cytosol, extracellular	87.27	86.1
CDX79510	Canola	endoplasmic reticulum	86.82	86.04
CDY10053	Canola	endoplasmic reticulum	85.91	85.91
OQU90815	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	85.91	85.91
Os03t0803000-01	Rice	plasma membrane	85.45	85.45
GSMUA_Achr2P17740_001	Banana	cytosol	84.09	84.47
TraesCS5B01G457700.1	Wheat	vacuole	83.64	82.88
TraesCS5D01G459900.1	Wheat	vacuole	83.64	82.88
HORVU5Hr1G107510.2	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	83.64	82.51
TraesCS5A01G449900.1	Wheat	unclear	83.64	82.51
CDY37751	Canola	endoplasmic reticulum, extracellular, plasma membrane	79.55	79.91
CDX79465	Canola	extracellular	30.45	77.91
CDY48527	Canola	cytosol	24.55	75.0
CDY23768	Canola	endoplasmic reticulum, extracellular, plasma membrane	55.45	73.05
Zm00001d019091_P002	Maize	vacuole	85.91	72.41
AT2G32670.1	Thale cress	endoplasmic reticulum, golgi	93.64	72.28
Zm00001d013055_P002	Maize	extracellular, plasma membrane	77.27	72.03
CDY22900	Canola	cytosol, plasma membrane, plastid	71.82	71.17
CDY44179	Canola	cytosol	71.36	70.72
GSMUA_Achr8P03260_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	67.27	67.27
CDY23767	Canola	extracellular	30.0	61.68
CDX67594	Canola	cytosol	61.36	56.02
CDY07551	Canola	cytosol	60.91	55.83
CDX76153	Canola	cytosol	60.91	55.37
CDX78228	Canola	cytosol, plasma membrane	59.55	54.58
CDY22757	Canola	cytosol	49.55	53.96
CDX73490	Canola	plasma membrane	59.09	53.94
CDY13199	Canola	plasma membrane	46.36	51.26
CDY61387	Canola	endoplasmic reticulum, plasma membrane	39.09	39.27
CDX69781	Canola	plasma membrane	39.09	38.91
CDX75224	Canola	endoplasmic reticulum, plasma membrane	38.18	38.18
CDX97084	Canola	plasma membrane	38.18	38.01
CDX70999	Canola	endoplasmic reticulum	37.73	37.56
CDX68821	Canola	endoplasmic reticulum, plasma membrane	37.27	37.27
CDX88799	Canola	plasma membrane	36.82	36.65
CDY09133	Canola	endoplasmic reticulum	35.91	35.75
TraesCS3B01G193500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	70.91	34.82
PGSC0003DMT400043452	Potato	cytosol	51.36	30.62
Solyc12g098170.1.1	Tomato	cytosol	16.36	11.8

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	GO:A0A078FJ82	UniProt:A0A078FJ82
EnsemblPlants:CDY12188	ProteinID:CDY12188	ProteinID:CDY12188.1	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	EnsemblPlantsGene:GSBRNA2T00061201001	InterPro:IPR001388	InterPro:IPR010908
InterPro:Longin-like_dom_sf	InterPro:Longin_dom	PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417
PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF120	SMART:SM01270	SUPFAM:SSF58038
SUPFAM:SSF64356	InterPro:Synaptobrevin	TMHMM:TMhelix	UniParc:UPI00025475D0	SEG:seg	:

Description

BnaC04g12180DBnaC04g12180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJ82]

Coordinates

chrLK032018:-:272389..273989

Molecular Weight (calculated)

24975.5 Da

IEP (calculated)

9.531

GRAVY (calculated)

-0.216

Length

220 amino acids

Sequence
(BLAST)

001: MGQQNLIYSF VARGTVILAE YTEFKGNFTS VAAQCLQKLP SSNNKFTYNC DGHTFNYLVE NGFTYCVVAV ESAGRQITMA FLERVKEDFN KRYGGGKATT
101: AKPNSLNKEF GSKLKGHMQY CVDHPEEINK LSKVKAQVTE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTQG TKIRRKMWWE NMKIKLIVLG
201: IIIALILIII LSVCHGFKCT

Best Arabidopsis Sequence Match ( AT1G04760.2 )
(BLAST)

001: MGQQSLIYSF VARGTVILAE YTEFKGNFTS VAAQCLQKLP SSNNKFTYNC DGHTFNYLAD NGFTYCVVVI ESAGRQIPMA FLERVKEDFN KRYGGGKAST
101: AKANSLNKEF GSKLKEHMQY CADHPEEISK LSKVKAQVTE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTQG TKMKRKLWFE NMKIKLIVFG
201: IIVALILIII LSVCHGFKCT

Arabidopsis Description

VAMP726Putative vesicle-associated membrane protein 726 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAS5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.