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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 1
  • cytosol 2
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 3
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra007063.1-P Field mustard cytosol, plasma membrane 99.17 99.17
CDX73490 Canola plasma membrane 97.92 97.51
CDX67594 Canola cytosol 96.67 96.27
CDX76153 Canola cytosol 96.25 95.45
CDY07551 Canola cytosol 95.42 95.42
AT3G54300.3 Thale cress cytosol 94.58 94.58
KRH36005 Soybean endoplasmic reticulum 85.83 86.55
CDY13199 Canola plasma membrane 71.67 86.43
Solyc11g006780.1.1 Tomato cytosol, mitochondrion, plasma membrane 85.83 85.83
PGSC0003DMT400061574 Potato endoplasmic reticulum, mitochondrion, plasma membrane 85.83 85.83
VIT_13s0101g00410.t01 Wine grape endoplasmic reticulum, golgi 82.08 82.43
GSMUA_Achr8P32930_001 Banana cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 77.5 78.15
Zm00001d031942_P003 Maize plastid 72.92 72.61
Os08t0558600-01 Rice extracellular 72.92 72.61
KXG25383 Sorghum plastid 72.92 72.61
TraesCS7D01G278900.1 Wheat plasma membrane, plastid 72.5 71.9
TraesCS7B01G181100.1 Wheat cytosol, plastid 72.08 71.49
TraesCS7A01G279100.1 Wheat cytosol, plastid 72.08 71.49
KRG90750 Soybean cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 74.58 70.75
CDY48527 Canola cytosol 18.33 61.11
CDY59643 Canola extracellular 18.75 60.81
CDX79510 Canola endoplasmic reticulum 55.83 60.36
CDX86608 Canola endoplasmic reticulum 55.0 60.27
CDY15521 Canola endoplasmic reticulum 55.0 60.27
CDY18254 Canola endoplasmic reticulum 55.0 60.0
CDX89793 Canola endoplasmic reticulum 55.0 60.0
CDY17139 Canola cytosol, extracellular 55.42 59.64
CDX84731 Canola cytosol 54.58 59.55
CDY12188 Canola cytosol 54.58 59.55
CDX84702 Canola endoplasmic reticulum 55.0 59.46
CDY19450 Canola cytosol, extracellular 55.0 59.19
CDY19154 Canola cytosol 53.75 58.64
CDY06150 Canola cytosol 53.75 58.64
CDY10053 Canola endoplasmic reticulum 53.33 58.18
CDY48531 Canola cytosol 52.5 57.27
CDX79466 Canola endoplasmic reticulum 39.17 53.41
CDY37751 Canola endoplasmic reticulum, extracellular, plasma membrane 47.92 52.51
CDY19156 Canola cytosol 31.25 52.08
CDY44179 Canola cytosol 47.92 51.8
CDY22900 Canola cytosol, plasma membrane, plastid 47.5 51.35
CDX79465 Canola extracellular 18.33 51.16
CDY59642 Canola endoplasmic reticulum 37.92 51.12
EES09956 Sorghum cytosol, mitochondrion, nucleus, plastid 16.67 48.19
CDY23767 Canola extracellular 20.83 46.73
CDY23768 Canola endoplasmic reticulum, extracellular, plasma membrane 32.5 46.71
CDY22757 Canola cytosol 32.92 39.11
CDY61387 Canola endoplasmic reticulum, plasma membrane 32.92 36.07
CDX97084 Canola plasma membrane 32.92 35.75
CDX69781 Canola plasma membrane 32.92 35.75
CDX75224 Canola endoplasmic reticulum, plasma membrane 32.08 35.0
CDX68821 Canola endoplasmic reticulum, plasma membrane 31.67 34.55
CDY09133 Canola endoplasmic reticulum 30.83 33.48
CDX70999 Canola endoplasmic reticulum 30.42 33.03
CDX88799 Canola plasma membrane 29.58 32.13
Protein Annotations
Gene3D:1.20.5.110MapMan:22.7.5.1Gene3D:3.30.450.50GO:A0A078CSV2EnsemblPlants:CDX78228ProteinID:CDX78228
ProteinID:CDX78228.1GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021
GO:GO:0016192EnsemblPlantsGene:GSBRNA2T00129550001InterPro:IPR001388InterPro:IPR010908InterPro:Longin-like_dom_sfInterPro:Longin_dom
PFAM:PF00957PFAM:PF13774PRINTS:PR00219ScanProsite:PS00417PFscan:PS50859PFscan:PS50892
PANTHER:PTHR21136PANTHER:PTHR21136:SF169SMART:SM01270SUPFAM:SSF58038SUPFAM:SSF64356InterPro:Synaptobrevin
TMHMM:TMhelixUniParc:UPI0004EED15BSEG:seg:::
Description
BnaA09g34230D
Coordinates
chrLK031814:-:1862873..1865288
Molecular Weight (calculated)
27395.0 Da
IEP (calculated)
6.511
GRAVY (calculated)
-0.231
Length
240 amino acids
Sequence
(BLAST)
001: MSQKGLIYSF VAKGTVVLAE HTPYSGNFST IAVQCLQKLP TNSSKYTYSC DAHTFNFLVH NGFVFLVVAD ESTGRSVPFV FLERVKEDFK KRYAASIKND
101: ELHPLDDDDE DDDLFGDRFS IAYNLDREFG PILKEHMQYC MSHPEEMSKL SKLKAQINDV KGIMMDNIEK VLDRGEKIEL LVDKSENLQF QADSFQRQGR
201: QLRRKMWIQS LQMKLMVGGA VMSFILIVWV VACGGFKCSS
Best Arabidopsis Sequence Match ( AT3G54300.1 )
(BLAST)
001: MSQKGLIYSF VAKGTVVLAE HTPYSGNFST IAVQCLQKLP TNSSKYTYSC DGHTFNFLVD NGFVFLVVAD ESTGRSVPFV FLERVKEDFK KRYEASIKND
101: ERHPLADEDE DDDLFGDRFS VAYNLDREFG PILKEHMQYC MSHPEEMSKL SKLKAQITEV KGIMMDNIEK VLDRGEKIEL LVDKTENLQF QADSFQRQGR
201: QLRRKMWLQS LQMKLMVAGA VFSFILIVWV VACGGFKCSS
Arabidopsis Description
VAMP727Vesicle-associated membrane protein 727 [Source:UniProtKB/Swiss-Prot;Acc:Q9M376]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.