Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- extracellular 4
- endoplasmic reticulum 5
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G04750.1 | CDY02165 | AT5G61210.1 | 23661365 |
| AT1G04750.1 | CDY23079 | AT5G61210.1 | 23661365 |
| AT1G04750.1 | CDY42860 | AT5G61210.1 | 23661365 |
| AT1G04750.1 | CDY47025 | AT5G61210.1 | 23661365 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015345.1-P | Field mustard | endoplasmic reticulum | 100.0 | 100.0 |
| CDY18254 | Canola | endoplasmic reticulum | 99.55 | 99.55 |
| AT1G04750.1 | Thale cress | endoplasmic reticulum, golgi | 97.73 | 98.17 |
| CDX86608 | Canola | endoplasmic reticulum | 97.73 | 98.17 |
| CDY10053 | Canola | endoplasmic reticulum | 96.82 | 96.82 |
| CDY15521 | Canola | endoplasmic reticulum | 96.36 | 96.8 |
| CDY06150 | Canola | cytosol | 96.36 | 96.36 |
| CDX84702 | Canola | endoplasmic reticulum | 96.36 | 95.5 |
| CDY17139 | Canola | cytosol, extracellular | 96.36 | 95.07 |
| CDX79510 | Canola | endoplasmic reticulum | 95.91 | 95.05 |
| CDY19450 | Canola | cytosol, extracellular | 95.91 | 94.62 |
| VIT_05s0136g00290.t01 | Wine grape | extracellular | 90.45 | 90.45 |
| GSMUA_Achr9P25440_001 | Banana | cytosol, vacuole | 90.0 | 90.41 |
| GSMUA_Achr8P15290_001 | Banana | cytosol, endoplasmic reticulum | 89.09 | 89.5 |
| GSMUA_Achr7P01760_001 | Banana | plasma membrane | 88.64 | 89.04 |
| Os07t0194000-01 | Rice | plasma membrane | 88.64 | 88.64 |
| CDY12188 | Canola | cytosol | 88.18 | 88.18 |
| GSMUA_Achr9P11030_001 | Banana | cytosol | 87.73 | 88.13 |
| GSMUA_Achr4P22260_001 | Banana | cytosol, extracellular | 87.73 | 88.13 |
| CDX84731 | Canola | cytosol | 87.73 | 87.73 |
| Os03t0803000-01 | Rice | plasma membrane | 87.27 | 87.27 |
| EER96027 | Sorghum | extracellular | 87.73 | 86.94 |
| Zm00001d007767_P001 | Maize | extracellular | 87.73 | 86.94 |
| OQU90815 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 86.82 | 86.82 |
| CDY19154 | Canola | cytosol | 85.91 | 85.91 |
| GSMUA_Achr2P17740_001 | Banana | cytosol | 85.45 | 85.84 |
| CDY48531 | Canola | cytosol | 84.09 | 84.09 |
| CDY37751 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 83.64 | 84.02 |
| TraesCS5B01G457700.1 | Wheat | vacuole | 83.18 | 82.43 |
| TraesCS5D01G459900.1 | Wheat | vacuole | 83.18 | 82.43 |
| HORVU5Hr1G107510.2 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 83.18 | 82.06 |
| TraesCS5A01G449900.1 | Wheat | unclear | 83.18 | 82.06 |
| CDX79466 | Canola | endoplasmic reticulum | 63.64 | 79.55 |
| CDY19156 | Canola | cytosol | 51.82 | 79.17 |
| CDY59643 | Canola | extracellular | 26.36 | 78.38 |
| CDY59642 | Canola | endoplasmic reticulum | 63.18 | 78.09 |
| CDY23768 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 58.64 | 77.25 |
| Zm00001d019091_P002 | Maize | vacuole | 86.82 | 73.18 |
| Zm00001d013055_P002 | Maize | extracellular, plasma membrane | 78.18 | 72.88 |
| CDY48527 | Canola | cytosol | 23.64 | 72.22 |
| CDY22900 | Canola | cytosol, plasma membrane, plastid | 70.0 | 69.37 |
| GSMUA_Achr8P03260_001 | Banana | cytosol, mitochondrion, plasma membrane, plastid | 69.09 | 69.09 |
| CDY44179 | Canola | cytosol | 69.55 | 68.92 |
| CDX79465 | Canola | extracellular | 26.82 | 68.6 |
| CDY23767 | Canola | extracellular | 31.36 | 64.49 |
| CDX67594 | Canola | cytosol | 61.36 | 56.02 |
| CDY07551 | Canola | cytosol | 60.91 | 55.83 |
| CDX76153 | Canola | cytosol | 61.36 | 55.79 |
| CDX78228 | Canola | cytosol, plasma membrane | 60.0 | 55.0 |
| CDX73490 | Canola | plasma membrane | 59.55 | 54.36 |
| CDY22757 | Canola | cytosol | 49.55 | 53.96 |
| CDY13199 | Canola | plasma membrane | 46.82 | 51.76 |
| CDY61387 | Canola | endoplasmic reticulum, plasma membrane | 40.0 | 40.18 |
| CDX75224 | Canola | endoplasmic reticulum, plasma membrane | 39.55 | 39.55 |
| CDX69781 | Canola | plasma membrane | 39.55 | 39.37 |
| CDX68821 | Canola | endoplasmic reticulum, plasma membrane | 38.64 | 38.64 |
| CDX97084 | Canola | plasma membrane | 38.64 | 38.46 |
| CDX70999 | Canola | endoplasmic reticulum | 38.18 | 38.01 |
| CDX88799 | Canola | plasma membrane | 37.27 | 37.1 |
| CDY09133 | Canola | endoplasmic reticulum | 36.36 | 36.2 |
| TraesCS3B01G193500.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 70.0 | 34.38 |
| PGSC0003DMT400043452 | Potato | cytosol | 52.27 | 31.17 |
| Solyc12g098170.1.1 | Tomato | cytosol | 15.91 | 11.48 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:13.4.2.3.4 | MapMan:22.7.5.1 | Gene3D:3.30.450.50 | GO:A0A078DRG5 | EnsemblPlants:CDX89793 |
| ProteinID:CDX89793 | ProteinID:CDX89793.1 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016192 | EnsemblPlantsGene:GSBRNA2T00150242001 | InterPro:IPR001388 | InterPro:IPR010908 | InterPro:Longin-like_dom_sf |
| InterPro:Longin_dom | PFAM:PF00957 | PFAM:PF13774 | PRINTS:PR00219 | ScanProsite:PS00417 | PFscan:PS50859 |
| PFscan:PS50892 | PANTHER:PTHR21136 | PANTHER:PTHR21136:SF92 | SMART:SM01270 | SUPFAM:SSF58038 | SUPFAM:SSF64356 |
| InterPro:Synaptobrevin | TMHMM:TMhelix | UniParc:UPI0002543CC4 | SEG:seg | : | : |
Description
BnaA10g02890D
Coordinates
chrLK031861:+:104036..105805
Molecular Weight (calculated)
24892.5 Da
IEP (calculated)
8.996
GRAVY (calculated)
-0.119
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQQQSLIYS FVARGTVILV EFTDFKGNFT SIAAQCLQKL PSSNNKFTYN CDGHTFNYLV EDGFTYCVVA VESAGRQIPM AFLERVKEDF NKRYGGGKAA
101: TAQANSLNKE FGSKLKEHMQ YCMDHPDEIS KLAKVKAQVS EVKGVMMENI EKVLDRGEKI ELLVDKTENL RSQAQDFRTT GTQMRRKMWL QNMKIKLIVL
201: AIIIALILII VLSVCHGFKC
101: TAQANSLNKE FGSKLKEHMQ YCMDHPDEIS KLAKVKAQVS EVKGVMMENI EKVLDRGEKI ELLVDKTENL RSQAQDFRTT GTQMRRKMWL QNMKIKLIVL
201: AIIIALILII VLSVCHGFKC
001: MAQQSLIYSF VARGTVILVE FTDFKGNFTS IAAQCLQKLP SSNNKFTYNC DGHTFNYLVE DGFTYCVVAV DSAGRQIPMS FLERVKEDFN KRYGGGKAAT
101: AQANSLNKEF GSKLKEHMQY CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTTG TQMRRKMWLQ NMKIKLIVLA
201: IIIALILIIV LSVCHGFKC
101: AQANSLNKEF GSKLKEHMQY CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTTG TQMRRKMWLQ NMKIKLIVLA
201: IIIALILIIV LSVCHGFKC
Arabidopsis Description
VAMP721Putative vesicle-associated membrane protein, synaptobrevin 7B [Source:UniProtKB/TrEMBL;Acc:Q681L9]
SUBAcon: [endoplasmic reticulum,golgi]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.