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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 7
  • vacuole 5
  • plasma membrane 6
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:endoplasmic reticulum
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY19156 Canola cytosol 71.02 86.81
CDY59642 Canola endoplasmic reticulum 86.36 85.39
CDY48527 Canola cytosol 31.25 76.39
Bra022893.1-P Field mustard cytosol 90.91 72.73
CDX84731 Canola cytosol 90.91 72.73
CDY23768 Canola endoplasmic reticulum, extracellular, plasma membrane 67.05 70.66
CDY12188 Canola cytosol 87.5 70.0
CDY48531 Canola cytosol 85.23 68.18
CDY19154 Canola cytosol 85.23 68.18
AT1G04760.2 Thale cress cytosol 83.52 66.82
Os07t0194000-01 Rice plasma membrane 81.82 65.45
GSMUA_Achr4P22260_001 Banana cytosol, extracellular 81.25 65.3
GSMUA_Achr9P25440_001 Banana cytosol, vacuole 80.11 64.38
GSMUA_Achr8P15290_001 Banana cytosol, endoplasmic reticulum 80.11 64.38
Zm00001d007767_P001 Maize extracellular 80.68 63.96
EER96027 Sorghum extracellular 80.68 63.96
CDX86608 Canola endoplasmic reticulum 79.55 63.93
GSMUA_Achr9P11030_001 Banana cytosol 79.55 63.93
VIT_05s0136g00290.t01 Wine grape extracellular 79.55 63.64
CDX89793 Canola endoplasmic reticulum 79.55 63.64
CDY18254 Canola endoplasmic reticulum 79.55 63.64
GSMUA_Achr7P01760_001 Banana plasma membrane 78.98 63.47
OQU90815 Sorghum cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 78.98 63.18
CDX84702 Canola endoplasmic reticulum 79.55 63.06
CDY15521 Canola endoplasmic reticulum 78.41 63.01
GSMUA_Achr2P17740_001 Banana cytosol 78.41 63.01
Os03t0803000-01 Rice plasma membrane 78.41 62.73
CDX79510 Canola endoplasmic reticulum 78.98 62.61
CDY17139 Canola cytosol, extracellular 78.98 62.33
CDY06150 Canola cytosol 77.84 62.27
CDY19450 Canola cytosol, extracellular 78.41 61.88
CDY10053 Canola endoplasmic reticulum 77.27 61.82
TraesCS5B01G457700.1 Wheat vacuole 77.27 61.26
TraesCS5D01G459900.1 Wheat vacuole 77.27 61.26
TraesCS5A01G449900.1 Wheat unclear 77.27 60.99
HORVU5Hr1G107510.2 Barley cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 77.27 60.99
CDY37751 Canola endoplasmic reticulum, extracellular, plasma membrane 70.45 56.62
Zm00001d019091_P002 Maize vacuole 78.98 53.26
AT2G32670.1 Thale cress endoplasmic reticulum, golgi 85.23 52.63
Zm00001d013055_P002 Maize extracellular, plasma membrane 69.89 52.12
CDY44179 Canola cytosol 63.07 50.0
CDY22900 Canola cytosol, plasma membrane, plastid 62.5 49.55
GSMUA_Achr8P03260_001 Banana cytosol, mitochondrion, plasma membrane, plastid 61.36 49.09
CDY22757 Canola cytosol 56.25 49.01
CDY07551 Canola cytosol 55.68 40.83
CDX67594 Canola cytosol 55.11 40.25
CDX76153 Canola cytosol 54.55 39.67
CDX78228 Canola cytosol, plasma membrane 53.41 39.17
CDY13199 Canola plasma membrane 43.75 38.69
CDX73490 Canola plasma membrane 52.84 38.59
CDY61387 Canola endoplasmic reticulum, plasma membrane 39.2 31.51
CDX75224 Canola endoplasmic reticulum, plasma membrane 39.2 31.36
CDX68821 Canola endoplasmic reticulum, plasma membrane 38.64 30.91
CDX69781 Canola plasma membrane 38.64 30.77
CDX97084 Canola plasma membrane 38.07 30.32
CDX70999 Canola endoplasmic reticulum 37.5 29.86
CDX88799 Canola plasma membrane 36.93 29.41
CDY09133 Canola endoplasmic reticulum 36.36 28.96
PGSC0003DMT400043452 Potato cytosol 53.98 25.75
TraesCS3B01G193500.1 Wheat cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 64.77 25.45
CDY23767 Canola extracellular 10.23 16.82
CDX79465 Canola extracellular 5.68 11.63
CDY59643 Canola extracellular 3.98 9.46
Solyc12g098170.1.1 Tomato cytosol 11.36 6.56
Protein Annotations
Gene3D:1.20.5.110MapMan:13.4.2.3.4MapMan:22.7.5.1Gene3D:3.30.450.50GO:A0A078CQK7EnsemblPlants:CDX79466
ProteinID:CDX79466ProteinID:CDX79466.1GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020
GO:GO:0016021GO:GO:0016192EnsemblPlantsGene:GSBRNA2T00132207001InterPro:IPR001388InterPro:IPR010908InterPro:Longin-like_dom_sf
InterPro:Longin_domPFAM:PF00957PFAM:PF13774PRINTS:PR00219ScanProsite:PS00417PFscan:PS50859
PFscan:PS50892PANTHER:PTHR21136PANTHER:PTHR21136:SF92SUPFAM:SSF58038SUPFAM:SSF64356SignalP:SignalP-noTM
InterPro:SynaptobrevinTMHMM:TMhelixUniParc:UPI0004EE7004SEG:seg::
Description
BnaC03g18020D
Coordinates
chrLK031818:+:222350..223356
Molecular Weight (calculated)
20104.2 Da
IEP (calculated)
9.531
GRAVY (calculated)
0.010
Length
176 amino acids
Sequence
(BLAST)
001: MSWFLISCMR LCTLVLALTT YCVVAVESVG RQIPMAFLER VKEDFNKRYG GGKATTAKPN SLNKEFGSKL KEQMQYCVDH PEEINKLVKV KAQVTEVKGV
101: MMENIEKVLD RGEKIELLVD KTEDLRSQAQ DFRTQGTKIR RKMWFENMKI KLIVAGIIIA LILIIILSVC HGFKCT
Best Arabidopsis Sequence Match ( AT1G04750.1 )
(BLAST)
001: MAQQSLIYSF VARGTVILVE FTDFKGNFTS IAAQCLQKLP SSNNKFTYNC DGHTFNYLVE DGFTYCVVAV DSAGRQIPMS FLERVKEDFN KRYGGGKAAT
101: AQANSLNKEF GSKLKEHMQY CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTTG TQMRRKMWLQ NMKIKLIVLA
201: IIIALILIIV LSVCHGFKC
Arabidopsis Description
VAMP721Putative vesicle-associated membrane protein, synaptobrevin 7B [Source:UniProtKB/TrEMBL;Acc:Q681L9]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.