CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038066.1-P	Field mustard	cytosol	100.0	100.0
CDY22900	Canola	cytosol, plasma membrane, plastid	78.22	71.17
CDY44179	Canola	cytosol	78.22	71.17
KRH12042	Soybean	cytosol	72.28	66.06
KRH50864	Soybean	cytosol	71.78	65.61
KRH02246	Soybean	cytosol	71.29	65.16
AT4G15780.1	Thale cress	cytosol	58.91	64.67
KRH37118	Soybean	cytosol	70.79	64.13
CDY19156	Canola	cytosol	43.07	60.42
Solyc01g066940.2.1	Tomato	cytosol	65.84	60.18
VIT_05s0020g01430.t01	Wine grape	cytosol	65.35	59.73
CDY59642	Canola	endoplasmic reticulum	50.0	56.74
CDX79466	Canola	endoplasmic reticulum	49.01	56.25
CDY48527	Canola	cytosol	18.81	52.78
GSMUA_Achr9P30970_001	Banana	cytosol	59.41	52.63
CDY23768	Canola	endoplasmic reticulum, extracellular, plasma membrane	43.07	52.1
CDY15521	Canola	endoplasmic reticulum	54.46	50.23
CDY10053	Canola	endoplasmic reticulum	54.46	50.0
CDX86608	Canola	endoplasmic reticulum	53.96	49.77
CDX84702	Canola	endoplasmic reticulum	54.46	49.55
CDX79510	Canola	endoplasmic reticulum	54.46	49.55
CDY18254	Canola	endoplasmic reticulum	53.96	49.55
CDY12188	Canola	cytosol	53.96	49.55
CDY06150	Canola	cytosol	53.96	49.55
CDX89793	Canola	endoplasmic reticulum	53.96	49.55
CDY17139	Canola	cytosol, extracellular	54.46	49.33
CDY19450	Canola	cytosol, extracellular	54.46	49.33
CDY19154	Canola	cytosol	53.47	49.09
CDX84731	Canola	cytosol	53.47	49.09
CDY48531	Canola	cytosol	51.49	47.27
Os07t0249200-01	Rice	cytosol	57.43	46.77
PGSC0003DMT400029447	Potato	cytosol	65.35	44.59
CDY37751	Canola	endoplasmic reticulum, extracellular, plasma membrane	48.02	44.29
KXG34786	Sorghum	cytosol	54.46	44.18
Zm00001d005468_P001	Maize	cytosol	53.96	43.08
Zm00001d019298_P002	Maize	cytosol	51.98	41.5
TraesCS5D01G003800.1	Wheat	cytosol	46.04	40.26
TraesCS5A01G003100.1	Wheat	cytosol	46.04	40.09
CDX67594	Canola	cytosol	40.1	33.61
CDX76153	Canola	cytosol	40.1	33.47
CDY07551	Canola	cytosol	39.6	33.33
CDY13199	Canola	plasma membrane	32.67	33.17
CDX78228	Canola	cytosol, plasma membrane	39.11	32.92
CDX73490	Canola	plasma membrane	39.11	32.78
CDX69781	Canola	plasma membrane	26.73	24.43
CDX97084	Canola	plasma membrane	26.73	24.43
CDY61387	Canola	endoplasmic reticulum, plasma membrane	26.24	24.2
CDX70999	Canola	endoplasmic reticulum	26.24	23.98
CDX75224	Canola	endoplasmic reticulum, plasma membrane	25.74	23.64
CDX88799	Canola	plasma membrane	25.74	23.53
CDX68821	Canola	endoplasmic reticulum, plasma membrane	25.25	23.18
CDY09133	Canola	endoplasmic reticulum	25.25	23.08
CDY23767	Canola	extracellular	9.9	18.69
CDY59643	Canola	extracellular	5.45	14.86
CDX79465	Canola	extracellular	5.94	13.95

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.5.1	Gene3D:3.30.450.50	GO:A0A078GCG4	UniProt:A0A078GCG4	EnsemblPlants:CDY22757
ProteinID:CDY22757	ProteinID:CDY22757.1	ncoils:Coil	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	EnsemblPlantsGene:GSBRNA2T00021078001	InterPro:IPR001388	InterPro:IPR010908
InterPro:Longin-like_dom_sf	InterPro:Longin_dom	PFAM:PF00957	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859
PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF72	SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin
TMHMM:TMhelix	UniParc:UPI0002545C03	SEG:seg	:	:	:

Description

BnaA08g05870DBnaA08g05870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GCG4]

Coordinates

chrLK032135:-:357858..360356

Molecular Weight (calculated)

23083.4 Da

IEP (calculated)

9.702

GRAVY (calculated)

-0.242

Length

202 amino acids

Sequence
(BLAST)

001: MSFIRCEAEK VGSSGGCKRR RRDQERLTGT VTSGYCTLVF DIMEAYCVVA KDALSKQTWI AFLERVKADF KKRYGGGKAS AAIAKSLNKE FMPVMKEHMK
101: YIVDHAEEIE KLIKVKAQVS EVKSIMLENI DKAIDRGENL TVLSDKTENL RSQAQEYKKQ GTQVRRKLWY QNMKIKLVVL GILLLHVLII WLSICHGFDC
201: TD

Best Arabidopsis Sequence Match ( AT1G04750.1 )
(BLAST)

001: MAQQSLIYSF VARGTVILVE FTDFKGNFTS IAAQCLQKLP SSNNKFTYNC DGHTFNYLVE DGFTYCVVAV DSAGRQIPMS FLERVKEDFN KRYGGGKAAT
101: AQANSLNKEF GSKLKEHMQY CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTTG TQMRRKMWLQ NMKIKLIVLA
201: IIIALILIIV LSVCHGFKC

Arabidopsis Description

VAMP721Putative vesicle-associated membrane protein, synaptobrevin 7B [Source:UniProtKB/TrEMBL;Acc:Q681L9]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.