Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19156 | Canola | cytosol | 73.61 | 36.81 |
| CDX79466 | Canola | endoplasmic reticulum | 76.39 | 31.25 |
| CDY59642 | Canola | endoplasmic reticulum | 73.61 | 29.78 |
| Zm00001d053132_P001 | Maize | cytosol, endoplasmic reticulum, plasma membrane | 50.0 | 26.87 |
| CDY48531 | Canola | cytosol | 80.56 | 26.36 |
| CDX84731 | Canola | cytosol | 80.56 | 26.36 |
| CDY19154 | Canola | cytosol | 79.17 | 25.91 |
| CDY23768 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 56.94 | 24.55 |
| CDY12188 | Canola | cytosol | 75.0 | 24.55 |
| CDX86608 | Canola | endoplasmic reticulum | 73.61 | 24.2 |
| CDY15521 | Canola | endoplasmic reticulum | 73.61 | 24.2 |
| CDX79510 | Canola | endoplasmic reticulum | 73.61 | 23.87 |
| CDX84702 | Canola | endoplasmic reticulum | 73.61 | 23.87 |
| CDY19450 | Canola | cytosol, extracellular | 73.61 | 23.77 |
| CDY17139 | Canola | cytosol, extracellular | 73.61 | 23.77 |
| CDY18254 | Canola | endoplasmic reticulum | 72.22 | 23.64 |
| CDY10053 | Canola | endoplasmic reticulum | 72.22 | 23.64 |
| CDY06150 | Canola | cytosol | 72.22 | 23.64 |
| CDX89793 | Canola | endoplasmic reticulum | 72.22 | 23.64 |
| CDY37751 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 61.11 | 20.09 |
| CDY13199 | Canola | plasma membrane | 52.78 | 19.1 |
| CDY22757 | Canola | cytosol | 52.78 | 18.81 |
| CDX67594 | Canola | cytosol | 62.5 | 18.67 |
| Zm00001d034505_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 73.61 | 18.6 |
| CDY07551 | Canola | cytosol | 61.11 | 18.33 |
| CDX78228 | Canola | cytosol, plasma membrane | 61.11 | 18.33 |
| CDY22900 | Canola | cytosol, plasma membrane, plastid | 55.56 | 18.02 |
| CDY44179 | Canola | cytosol | 55.56 | 18.02 |
| CDX73490 | Canola | plasma membrane | 59.72 | 17.84 |
| CDX76153 | Canola | cytosol | 59.72 | 17.77 |
| CDX97084 | Canola | plasma membrane | 37.5 | 12.22 |
| CDX69781 | Canola | plasma membrane | 37.5 | 12.22 |
| CDY61387 | Canola | endoplasmic reticulum, plasma membrane | 34.72 | 11.42 |
| CDX75224 | Canola | endoplasmic reticulum, plasma membrane | 34.72 | 11.36 |
| CDX68821 | Canola | endoplasmic reticulum, plasma membrane | 34.72 | 11.36 |
| CDX88799 | Canola | plasma membrane | 34.72 | 11.31 |
| CDX70999 | Canola | endoplasmic reticulum | 34.72 | 11.31 |
| CDY09133 | Canola | endoplasmic reticulum | 33.33 | 10.86 |
| CDY23767 | Canola | extracellular | 11.11 | 7.48 |
| CDX79465 | Canola | extracellular | 6.94 | 5.81 |
| CDY59643 | Canola | extracellular | 5.56 | 5.41 |
Protein Annotations
| EnsemblPlants:CDY48527 | EnsemblPlantsGene:GSBRNA2T00091239001 | Gene3D:1.20.5.110 | GO:A0A078IF00 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:IPR001388 | InterPro:Synaptobrevin |
| PANTHER:PTHR21136 | PANTHER:PTHR21136:SF109 | PFAM:PF00957 | PFscan:PS50892 | PRINTS:PR00219 | ProteinID:CDY48527 |
| ProteinID:CDY48527.1 | SUPFAM:SSF58038 | UniParc:UPI0004EE903A | UniProt:A0A078IF00 | MapMan:22.7.5.1 | : |
Description
BnaC04g43220DBnaC04g43220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IF00]
Coordinates
chrLK032777:-:52446..53136
Molecular Weight (calculated)
8365.3 Da
IEP (calculated)
4.821
GRAVY (calculated)
-0.167
Length
72 amino acids
Sequence
(BLAST)
(BLAST)
1: MHKSLGVMME HMQYCVDHPE EINELAKVKA QVTEVKGVMM ENIEKVLDCG EKIELLVDKS EDLRSHVFFF LN
001: MDRSVVPISL APFQFLLVFW IFLTSVHTNP NKQQKTVVSL SLWWNSKNRI RGCVWFFFLL RVTRTMGQQN LIYSFVARGT VILVEYTEFK GNFTAVAAQC
101: LQKLPSSNNK FTYNCDGHTF NYLVENGFTY CVVAVESVGR QIPMAFLERV KEDFNKRYGG GKATTAQANS LNREFGSKLK EHMQYCVDHP DEISKLAKVK
201: AQVTEVKGVM MENIEKVLDR GEKIELLVDK TENLRSQAQD FRTQGTKIRR KMWFENMKIK LIVLGIIITL ILIIILSVCG GFKCT
101: LQKLPSSNNK FTYNCDGHTF NYLVENGFTY CVVAVESVGR QIPMAFLERV KEDFNKRYGG GKATTAQANS LNREFGSKLK EHMQYCVDHP DEISKLAKVK
201: AQVTEVKGVM MENIEKVLDR GEKIELLVDK TENLRSQAQD FRTQGTKIRR KMWFENMKIK LIVLGIIITL ILIIILSVCG GFKCT
Arabidopsis Description
VAMP725Vesicle-associated membrane protein 725 [Source:UniProtKB/Swiss-Prot;Acc:O48850]
SUBAcon: [endoplasmic reticulum,golgi]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.