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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • nucleus 2
  • mitochondrion 1
  • cytosol 3
  • extracellular 1
  • golgi 1
  • plasma membrane 1
  • endoplasmic reticulum 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:plastid
EpiLoc:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:secretory
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra022893.1-P Field mustard cytosol 100.0 100.0
CDY12188 Canola cytosol 96.36 96.36
CDY19154 Canola cytosol 94.09 94.09
CDY48531 Canola cytosol 94.09 94.09
AT1G04760.2 Thale cress cytosol 92.27 92.27
CDX79466 Canola endoplasmic reticulum 72.73 90.91
VIT_05s0136g00290.t01 Wine grape extracellular 88.64 88.64
Os07t0194000-01 Rice plasma membrane 88.64 88.64
CDX86608 Canola endoplasmic reticulum 88.18 88.58
GSMUA_Achr4P22260_001 Banana cytosol, extracellular 88.18 88.58
CDY19156 Canola cytosol 57.73 88.19
GSMUA_Achr8P15290_001 Banana cytosol, endoplasmic reticulum 87.73 88.13
CDY59643 Canola extracellular 29.55 87.84
CDX89793 Canola endoplasmic reticulum 87.73 87.73
CDY18254 Canola endoplasmic reticulum 87.73 87.73
GSMUA_Achr7P01760_001 Banana plasma membrane 87.27 87.67
CDY15521 Canola endoplasmic reticulum 86.82 87.21
CDX84702 Canola endoplasmic reticulum 87.73 86.94
Zm00001d007767_P001 Maize extracellular 87.73 86.94
EER96027 Sorghum extracellular 87.73 86.94
GSMUA_Achr9P25440_001 Banana cytosol, vacuole 86.36 86.76
GSMUA_Achr9P11030_001 Banana cytosol 86.36 86.76
CDY17139 Canola cytosol, extracellular 87.73 86.55
OQU90815 Sorghum cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 86.36 86.36
CDY19450 Canola cytosol, extracellular 87.27 86.1
CDX79510 Canola endoplasmic reticulum 86.82 86.04
CDY06150 Canola cytosol 85.91 85.91
Os03t0803000-01 Rice plasma membrane 85.91 85.91
CDY10053 Canola endoplasmic reticulum 85.45 85.45
GSMUA_Achr2P17740_001 Banana cytosol 84.55 84.93
CDY59642 Canola endoplasmic reticulum 68.64 84.83
TraesCS5B01G457700.1 Wheat vacuole 84.09 83.33
TraesCS5D01G459900.1 Wheat vacuole 84.09 83.33
TraesCS5A01G449900.1 Wheat unclear 84.09 82.96
HORVU5Hr1G107510.2 Barley cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 84.09 82.96
CDY48527 Canola cytosol 26.36 80.56
CDY37751 Canola endoplasmic reticulum, extracellular, plasma membrane 79.55 79.91
CDX79465 Canola extracellular 30.91 79.07
CDY23768 Canola endoplasmic reticulum, extracellular, plasma membrane 55.91 73.65
AT2G32670.1 Thale cress endoplasmic reticulum, golgi 94.55 72.98
Zm00001d013055_P002 Maize extracellular, plasma membrane 78.18 72.88
Zm00001d019091_P002 Maize vacuole 86.36 72.8
CDY22900 Canola cytosol, plasma membrane, plastid 70.91 70.27
CDY44179 Canola cytosol 70.45 69.82
GSMUA_Achr8P03260_001 Banana cytosol, mitochondrion, plasma membrane, plastid 68.18 68.18
CDY23767 Canola extracellular 30.0 61.68
CDX67594 Canola cytosol 61.36 56.02
CDY07551 Canola cytosol 60.91 55.83
CDX76153 Canola cytosol 60.91 55.37
CDX78228 Canola cytosol, plasma membrane 59.55 54.58
CDX73490 Canola plasma membrane 59.09 53.94
CDY22757 Canola cytosol 49.09 53.47
CDY13199 Canola plasma membrane 45.91 50.75
CDY61387 Canola endoplasmic reticulum, plasma membrane 37.73 37.9
CDX75224 Canola endoplasmic reticulum, plasma membrane 37.73 37.73
CDX70999 Canola endoplasmic reticulum 37.73 37.56
CDX69781 Canola plasma membrane 37.73 37.56
CDX97084 Canola plasma membrane 37.27 37.1
CDX68821 Canola endoplasmic reticulum, plasma membrane 36.82 36.82
CDX88799 Canola plasma membrane 36.82 36.65
CDY09133 Canola endoplasmic reticulum 36.36 36.2
TraesCS3B01G193500.1 Wheat cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 72.27 35.49
PGSC0003DMT400043452 Potato cytosol 50.91 30.35
Solyc12g098170.1.1 Tomato cytosol 17.27 12.46
Protein Annotations
Gene3D:1.20.5.110MapMan:13.4.2.3.4MapMan:22.7.5.1Gene3D:3.30.450.50GO:A0A078D5W5EnsemblPlants:CDX84731
ProteinID:CDX84731ProteinID:CDX84731.1GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020
GO:GO:0016021GO:GO:0016192EnsemblPlantsGene:GSBRNA2T00142016001InterPro:IPR001388InterPro:IPR010908InterPro:Longin-like_dom_sf
InterPro:Longin_domPFAM:PF00957PFAM:PF13774PRINTS:PR00219ScanProsite:PS00417PFscan:PS50859
PFscan:PS50892PANTHER:PTHR21136PANTHER:PTHR21136:SF120SMART:SM01270SUPFAM:SSF58038SUPFAM:SSF64356
InterPro:SynaptobrevinTMHMM:TMhelixUniParc:UPI000254039ESEG:seg::
Description
BnaA03g14990D
Coordinates
chrLK031838:-:964827..967407
Molecular Weight (calculated)
24945.5 Da
IEP (calculated)
9.365
GRAVY (calculated)
-0.169
Length
220 amino acids
Sequence
(BLAST)
001: MGQQNLIYSF VARGTVILAE YTEFKGNFTS VAAQCLQKLP SSNNKFTYNC DGHTFNYLVV NGFTYCVVAV ESVGRQIPMA FLERVKEDFN KRYGGGKATT
101: AKPNSLNKEF GSKLKEHMQY CVDHPEEINK LAKVKAQVTE VKGVMMENIE KVLDRGEKIE LLVDKTEDLR SQAQDFRTQG TKIRRKMWFE NMKIKLIVAG
201: IIIALILIII LSVCHGFKCT
Best Arabidopsis Sequence Match ( AT2G32670.1 )
(BLAST)
001: MDRSVVPISL APFQFLLVFW IFLTSVHTNP NKQQKTVVSL SLWWNSKNRI RGCVWFFFLL RVTRTMGQQN LIYSFVARGT VILVEYTEFK GNFTAVAAQC
101: LQKLPSSNNK FTYNCDGHTF NYLVENGFTY CVVAVESVGR QIPMAFLERV KEDFNKRYGG GKATTAQANS LNREFGSKLK EHMQYCVDHP DEISKLAKVK
201: AQVTEVKGVM MENIEKVLDR GEKIELLVDK TENLRSQAQD FRTQGTKIRR KMWFENMKIK LIVLGIIITL ILIIILSVCG GFKCT
Arabidopsis Description
VAMP725Vesicle-associated membrane protein 725 [Source:UniProtKB/Swiss-Prot;Acc:O48850]
SUBAcon: [golgi,endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.