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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 2
  • nucleus 2
  • mitochondrion 1
  • cytosol 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:plastid
EpiLoc:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:secretory
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY12188 Canola cytosol 92.27 92.27
CDX84731 Canola cytosol 92.27 92.27
Bra022893.1-P Field mustard cytosol 92.27 92.27
Bra005568.1-P Field mustard cytosol 92.27 92.27
CDY19154 Canola cytosol 88.18 88.18
Bra021804.1-P Field mustard cytosol 88.18 88.18
VIT_05s0136g00290.t01 Wine grape extracellular 87.73 87.73
AT1G04750.1 Thale cress endoplasmic reticulum, golgi 86.82 87.21
CDY48531 Canola cytosol 86.82 86.82
CDY59643 Canola extracellular 28.64 85.14
AT2G33120.2 Thale cress golgi 87.27 83.84
CDX79466 Canola endoplasmic reticulum 66.82 83.52
CDY19156 Canola cytosol 54.09 82.64
CDY59642 Canola endoplasmic reticulum 65.45 80.9
CDX79465 Canola extracellular 29.55 75.58
AT2G33110.1 Thale cress extracellular, golgi 73.64 74.65
AT4G15780.1 Thale cress cytosol 58.64 70.11
AT2G32670.1 Thale cress endoplasmic reticulum, golgi 90.45 69.82
CDY23767 Canola extracellular 30.0 61.68
AT3G54300.3 Thale cress cytosol 61.82 56.67
AT3G24890.2 Thale cress cytosol 28.18 50.0
AT5G11150.2 Thale cress golgi, plasma membrane 39.09 38.05
AT4G32150.1 Thale cress golgi, plasma membrane 37.73 37.9
AT5G22360.1 Thale cress plasma membrane 36.82 36.65
AT2G25340.1 Thale cress endoplasmic reticulum, plasma membrane 35.91 36.07
Protein Annotations
Gene3D:1.20.5.110MapMan:13.4.2.3.4MapMan:22.7.5.1Gene3D:3.30.450.50EntrezGene:839424ProteinID:AAF40460.1
ProteinID:AEE27740.1ProteinID:ANM61115.1ArrayExpress:AT1G04760EnsemblPlantsGene:AT1G04760RefSeq:AT1G04760TAIR:AT1G04760
RefSeq:AT1G04760-TAIR-GEnsemblPlants:AT1G04760.2Symbol:ATVAMP726GO:GO:0000149GO:GO:0003674GO:GO:0005484
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005768GO:GO:0005886GO:GO:0006810GO:GO:0006887GO:GO:0006906GO:GO:0008150
GO:GO:0009507GO:GO:0009536GO:GO:0009987GO:GO:0015031GO:GO:0016020GO:GO:0016021
GO:GO:0016043GO:GO:0016192GO:GO:0031201GO:GO:0031901InterPro:IPR001388InterPro:IPR010908
InterPro:Longin-like_dom_sfInterPro:Longin_domRefSeq:NP_001323352.1RefSeq:NP_171968.1PFAM:PF00957PFAM:PF13774
PRINTS:PR00219ScanProsite:PS00417PFscan:PS50859PFscan:PS50892PANTHER:PTHR21136PANTHER:PTHR21136:SF120
UniProt:Q9MAS5SMART:SM01270SUPFAM:SSF58038SUPFAM:SSF64356InterPro:SynaptobrevinTMHMM:TMhelix
UniParc:UPI0000162C5ASEG:seg::::
Description
VAMP726Putative vesicle-associated membrane protein 726 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAS5]
Coordinates
chr1:+:1334599..1336704
Molecular Weight (calculated)
24874.3 Da
IEP (calculated)
9.359
GRAVY (calculated)
-0.194
Length
220 amino acids
Sequence
(BLAST)
001: MGQQSLIYSF VARGTVILAE YTEFKGNFTS VAAQCLQKLP SSNNKFTYNC DGHTFNYLAD NGFTYCVVVI ESAGRQIPMA FLERVKEDFN KRYGGGKAST
101: AKANSLNKEF GSKLKEHMQY CADHPEEISK LSKVKAQVTE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTQG TKMKRKLWFE NMKIKLIVFG
201: IIVALILIII LSVCHGFKCT
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.