Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86608 | Canola | endoplasmic reticulum | 98.17 | 98.17 |
| CDY18254 | Canola | endoplasmic reticulum | 98.17 | 97.73 |
| CDX89793 | Canola | endoplasmic reticulum | 98.17 | 97.73 |
| Bra015345.1-P | Field mustard | endoplasmic reticulum | 98.17 | 97.73 |
| CDY15521 | Canola | endoplasmic reticulum | 97.72 | 97.72 |
| Bra030588.1-P | Field mustard | endoplasmic reticulum | 95.89 | 95.89 |
| CDY10053 | Canola | endoplasmic reticulum | 95.89 | 95.45 |
| Bra032493.1-P | Field mustard | cytosol | 95.89 | 95.45 |
| CDY06150 | Canola | cytosol | 95.43 | 95.0 |
| AT2G33120.2 | Thale cress | golgi | 95.89 | 91.7 |
| VIT_05s0136g00290.t01 | Wine grape | extracellular | 89.5 | 89.09 |
| AT1G04760.2 | Thale cress | cytosol | 87.21 | 86.82 |
| AT2G33110.1 | Thale cress | extracellular, golgi | 80.37 | 81.11 |
| AT4G15780.1 | Thale cress | cytosol | 58.45 | 69.57 |
| AT2G32670.1 | Thale cress | endoplasmic reticulum, golgi | 89.5 | 68.77 |
| AT3G54300.3 | Thale cress | cytosol | 62.1 | 56.67 |
| AT3G24890.2 | Thale cress | cytosol | 27.85 | 49.19 |
| AT5G11150.2 | Thale cress | golgi, plasma membrane | 41.55 | 40.27 |
| AT4G32150.1 | Thale cress | golgi, plasma membrane | 39.73 | 39.73 |
| AT5G22360.1 | Thale cress | plasma membrane | 38.81 | 38.46 |
| AT2G25340.1 | Thale cress | endoplasmic reticulum, plasma membrane | 36.53 | 36.53 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:13.4.2.3.4 | MapMan:22.7.5.1 | Gene3D:3.30.450.50 | EntrezGene:839419 | UniProt:A0A178W204 |
| ProteinID:AAB80624.1 | ProteinID:AAF40468.1 | ProteinID:AEE27738.1 | EMBL:AF025333 | EMBL:AK175215 | EMBL:AK175598 |
| EMBL:AK175611 | EMBL:AK175674 | EMBL:AK175794 | EMBL:AK175829 | EMBL:AK175972 | EMBL:AK176231 |
| EMBL:AK176285 | EMBL:AK176291 | EMBL:AK176386 | EMBL:AK176652 | EMBL:AK176656 | EMBL:AK176879 |
| ArrayExpress:AT1G04750 | EnsemblPlantsGene:AT1G04750 | RefSeq:AT1G04750 | TAIR:AT1G04750 | RefSeq:AT1G04750-TAIR-G | EnsemblPlants:AT1G04750.1 |
| TAIR:AT1G04750.1 | EMBL:AY079164 | EMBL:AY133661 | Unigene:At.20250 | GO:GO:0000149 | GO:GO:0003674 |
| GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006887 | GO:GO:0006906 |
| GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009504 | GO:GO:0009506 | GO:GO:0009920 | GO:GO:0009987 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0031201 |
| GO:GO:0031901 | InterPro:IPR001388 | InterPro:IPR010908 | InterPro:Longin-like_dom_sf | InterPro:Longin_dom | RefSeq:NP_171967.1 |
| ProteinID:OAP12114.1 | PFAM:PF00957 | PFAM:PF13774 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00219 |
| ScanProsite:PS00417 | PFscan:PS50859 | PFscan:PS50892 | PANTHER:PTHR21136 | PANTHER:PTHR21136:SF92 | UniProt:Q681L9 |
| UniProt:Q9ZTW3 | SMART:SM01270 | SUPFAM:SSF58038 | SUPFAM:SSF64356 | InterPro:Synaptobrevin | TMHMM:TMhelix |
| UniParc:UPI0000138031 | Symbol:VAMP7B | SEG:seg | : | : | : |
Description
VAMP721Putative vesicle-associated membrane protein, synaptobrevin 7B [Source:UniProtKB/TrEMBL;Acc:Q681L9]
Coordinates
chr1:-:1331466..1333651
Molecular Weight (calculated)
24766.3 Da
IEP (calculated)
8.996
GRAVY (calculated)
-0.116
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQQSLIYSF VARGTVILVE FTDFKGNFTS IAAQCLQKLP SSNNKFTYNC DGHTFNYLVE DGFTYCVVAV DSAGRQIPMS FLERVKEDFN KRYGGGKAAT
101: AQANSLNKEF GSKLKEHMQY CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTTG TQMRRKMWLQ NMKIKLIVLA
201: IIIALILIIV LSVCHGFKC
101: AQANSLNKEF GSKLKEHMQY CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTTG TQMRRKMWLQ NMKIKLIVLA
201: IIIALILIIV LSVCHGFKC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.