Factsheet for Bra015345.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
nucleus 2
extracellular 4
endoplasmic reticulum 5
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012978.1-P
Bra029328.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04750.1	Bra012978.1-P	AT5G61210.1	23661365
AT1G04750.1	Bra029328.1-P	AT5G61210.1	23661365

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89793	Canola	endoplasmic reticulum	100.0	100.0
CDY18254	Canola	endoplasmic reticulum	99.55	99.55
AT1G04750.1	Thale cress	endoplasmic reticulum, golgi	97.73	98.17
Bra032493.1-P	Field mustard	cytosol	96.82	96.82
Bra022926.1-P	Field mustard	endoplasmic reticulum	96.36	95.5
Bra005523.1-P	Field mustard	cytosol, extracellular	96.36	95.07
Bra030588.1-P	Field mustard	endoplasmic reticulum	94.55	94.98
VIT_05s0136g00290.t01	Wine grape	extracellular	90.45	90.45
GSMUA_Achr9P25440_001	Banana	cytosol, vacuole	90.0	90.41
GSMUA_Achr8P15290_001	Banana	cytosol, endoplasmic reticulum	89.09	89.5
GSMUA_Achr7P01760_001	Banana	plasma membrane	88.64	89.04
Os07t0194000-01	Rice	plasma membrane	88.64	88.64
Bra005568.1-P	Field mustard	cytosol	88.18	88.18
GSMUA_Achr9P11030_001	Banana	cytosol	87.73	88.13
GSMUA_Achr4P22260_001	Banana	cytosol, extracellular	87.73	88.13
Bra022893.1-P	Field mustard	cytosol	87.73	87.73
Os03t0803000-01	Rice	plasma membrane	87.27	87.27
EER96027	Sorghum	extracellular	87.73	86.94
Zm00001d007767_P001	Maize	extracellular	87.73	86.94
OQU90815	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	86.82	86.82
GSMUA_Achr2P17740_001	Banana	cytosol	85.45	85.84
Bra021804.1-P	Field mustard	cytosol	85.45	85.45
Bra021828.1-P	Field mustard	endoplasmic reticulum, extracellular	84.09	84.47
TraesCS5B01G457700.1	Wheat	vacuole	83.18	82.43
TraesCS5D01G459900.1	Wheat	vacuole	83.18	82.43
HORVU5Hr1G107510.2	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	83.18	82.06
TraesCS5A01G449900.1	Wheat	unclear	83.18	82.06
Zm00001d019091_P002	Maize	vacuole	86.82	73.18
Zm00001d013055_P002	Maize	extracellular, plasma membrane	78.18	72.88
GSMUA_Achr8P03260_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	69.09	69.09
Bra033511.1-P	Field mustard	cytosol	69.55	68.92
Bra003177.1-P	Field mustard	cytosol	61.36	56.02
Bra014823.1-P	Field mustard	golgi	61.36	55.79
Bra007063.1-P	Field mustard	cytosol, plasma membrane	60.45	55.42
Bra038066.1-P	Field mustard	cytosol	49.55	53.96
Bra040067.1-P	Field mustard	endoplasmic reticulum, plasma membrane	40.0	40.18
Bra008987.1-P	Field mustard	mitochondrion	38.64	38.46
Bra006623.1-P	Field mustard	endoplasmic reticulum, plasma membrane	37.27	37.1
Bra020187.1-P	Field mustard	endoplasmic reticulum	36.36	36.2
TraesCS3B01G193500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	70.0	34.38
PGSC0003DMT400043452	Potato	cytosol	52.27	31.17
Bra011325.1-P	Field mustard	endoplasmic reticulum	36.36	21.92
Solyc12g098170.1.1	Tomato	cytosol	15.91	11.48

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	EnsemblPlantsGene:Bra015345	EnsemblPlants:Bra015345.1
EnsemblPlants:Bra015345.1-P	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016192	InterPro:IPR001388	InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	UniProt:M4DFS2
PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892
PANTHER:PTHR21136	PANTHER:PTHR21136:SF92	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin
TMHMM:TMhelix	UniParc:UPI0002543CC4	SEG:seg	:	:	:

Description

AT1G04750 (E=3e-110) VAMP7B, VAMP721, ATVAMP721, AT VAMP7B | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)

Coordinates

chrA10:+:2367550..2369164

Molecular Weight (calculated)

24892.5 Da

IEP (calculated)

8.996

GRAVY (calculated)

-0.119

Length

220 amino acids

Sequence
(BLAST)

001: MAQQQSLIYS FVARGTVILV EFTDFKGNFT SIAAQCLQKL PSSNNKFTYN CDGHTFNYLV EDGFTYCVVA VESAGRQIPM AFLERVKEDF NKRYGGGKAA
101: TAQANSLNKE FGSKLKEHMQ YCMDHPDEIS KLAKVKAQVS EVKGVMMENI EKVLDRGEKI ELLVDKTENL RSQAQDFRTT GTQMRRKMWL QNMKIKLIVL
201: AIIIALILII VLSVCHGFKC

Best Arabidopsis Sequence Match ( AT1G04750.1 )
(BLAST)

001: MAQQSLIYSF VARGTVILVE FTDFKGNFTS IAAQCLQKLP SSNNKFTYNC DGHTFNYLVE DGFTYCVVAV DSAGRQIPMS FLERVKEDFN KRYGGGKAAT
101: AQANSLNKEF GSKLKEHMQY CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTTG TQMRRKMWLQ NMKIKLIVLA
201: IIIALILIIV LSVCHGFKC

Arabidopsis Description

VAMP721Putative vesicle-associated membrane protein, synaptobrevin 7B [Source:UniProtKB/TrEMBL;Acc:Q681L9]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.