Factsheet for Bra020187.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012351.1-P
Bra024548.1-P
Bra026046.1-P
Bra026718.1-P
Bra039229.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G22360.1	Bra026046.1-P	AT1G16500.1	21798944
AT5G22360.1	Bra026718.1-P	AT1G16500.1	21798944
AT5G22360.1	Bra012351.1-P	AT1G22920.1	21798944
AT5G22360.1	Bra024548.1-P	AT1G22920.1	21798944
AT5G22360.1	Bra039229.1-P	AT2G24100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09133	Canola	endoplasmic reticulum	100.0	100.0
Bra006623.1-P	Field mustard	endoplasmic reticulum, plasma membrane	94.57	94.57
AT5G22360.1	Thale cress	plasma membrane	93.67	93.67
VIT_06s0080g00800.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	85.07	85.45
KRH30399	Soybean	endoplasmic reticulum	84.62	85.0
KRH25265	Soybean	plasma membrane	84.62	85.0
Zm00001d052756_P001	Maize	endoplasmic reticulum	73.76	84.46
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	82.35	83.49
GSMUA_Achr11P...	Banana	endoplasmic reticulum	81.9	83.03
TraesCS7D01G324800.1	Wheat	plasma membrane	81.9	81.53
TraesCS7B01G228700.1	Wheat	plasma membrane	81.9	81.53
TraesCS7A01G328000.1	Wheat	plasma membrane	81.9	81.53
EES13179	Sorghum	endoplasmic reticulum, plasma membrane	81.9	81.53
HORVU7Hr1G078500.1	Barley	plasma membrane	81.45	81.08
Os10t0154000-01	Rice	plasma membrane	81.45	79.65
PGSC0003DMT400015063	Potato	plastid	76.47	74.12
Solyc06g074250.2.1	Tomato	endoplasmic reticulum, plasma membrane	85.07	72.03
Bra040067.1-P	Field mustard	endoplasmic reticulum, plasma membrane	54.3	54.79
Bra008987.1-P	Field mustard	mitochondrion	53.39	53.39
Bra030588.1-P	Field mustard	endoplasmic reticulum	38.01	38.36
Bra032493.1-P	Field mustard	cytosol	38.01	38.18
Bra022926.1-P	Field mustard	endoplasmic reticulum	37.56	37.39
Bra005523.1-P	Field mustard	cytosol, extracellular	37.1	36.77
Bra022893.1-P	Field mustard	cytosol	36.2	36.36
Bra015345.1-P	Field mustard	endoplasmic reticulum	36.2	36.36
Bra005568.1-P	Field mustard	cytosol	35.75	35.91
Bra021804.1-P	Field mustard	cytosol	35.29	35.45
Bra021828.1-P	Field mustard	endoplasmic reticulum, extracellular	34.84	35.16
Bra033511.1-P	Field mustard	cytosol	33.03	32.88
Bra014823.1-P	Field mustard	golgi	34.84	31.82
Bra011325.1-P	Field mustard	endoplasmic reticulum	52.04	31.51
Bra007063.1-P	Field mustard	cytosol, plasma membrane	33.94	31.25
Bra003177.1-P	Field mustard	cytosol	33.94	31.12
Bra038066.1-P	Field mustard	cytosol	23.08	25.25

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.5.1	Gene3D:3.30.450.50	EnsemblPlantsGene:Bra020187	EnsemblPlants:Bra020187.1	EnsemblPlants:Bra020187.1-P
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192
InterPro:IPR001388	InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	UniProt:M4DUJ4	PFAM:PF00957
PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136
PANTHER:PTHR21136:SF165	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin	TMHMM:TMhelix
UniParc:UPI000254349A	:	:	:	:	:

Description

AT5G22360 (E=2e-117) ATVAMP714, VAMP714 | ATVAMP714 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 714)

Coordinates

chrA02:-:5454515..5455564

Molecular Weight (calculated)

25244.0 Da

IEP (calculated)

8.982

GRAVY (calculated)

0.073

Length

221 amino acids

Sequence
(BLAST)

001: MAIIYAVVAR GTVVLAEFSA VTGNTGAVVR RILEKLSPET ADERLCFSQD RYIFHILRSD GLTFLCMAND TFGRRLPFSY LEEIHMRFMK NYGRVAHSAP
101: AYAMNDEFSR VLHQQMEFFS SNPSVDTLNR VQGEVSEIRS VMVDNIEKIM ERGDRIELLV DKTATMQDNA FHFRKQSKRL RRALWMKNAK LLVMLTCVIV
201: LVLYIIIASF CGGITLPSCR S

Best Arabidopsis Sequence Match ( AT5G22360.1 )
(BLAST)

001: MAIVYAVVAR GTVVLAEFSA VTGNTGAVVR RILEKLSPEI SDERLCFSQD RYIFHILRSD GLTFLCMAND TFGRRVPFSY LEEIHMRFMK NYGKVAHNAP
101: AYAMNDEFSR VLHQQMEFFS SNPSVDTLNR VRGEVSEIRS VMVENIEKIM ERGDRIELLV DKTATMQDSS FHFRKQSKRL RRALWMKNAK LLVLLTCLIV
201: FLLYIIIASF CGGITLPSCR S

Arabidopsis Description

VAMP714Vesicle-associated membrane protein 714 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMR5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.