Factsheet for PGSC0003DMT400015063

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
mitochondrion 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400023896
PGSC0003DMT400029158
PGSC0003DMT400056874
PGSC0003DMT400069203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G22360.1	PGSC0003DMT400056874	AT1G16500.1	21798944
AT5G22360.1	PGSC0003DMT400023896	AT1G22920.1	21798944
AT5G22360.1	PGSC0003DMT400069203	AT1G22920.1	21798944
AT5G22360.1	PGSC0003DMT400029158	AT2G24100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052756_P001	Maize	endoplasmic reticulum	71.93	84.97
KRH25265	Soybean	plasma membrane	77.63	80.45
KRH30399	Soybean	endoplasmic reticulum	77.19	80.0
VIT_06s0080g00800.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	76.75	79.55
GSMUA_Achr11P...	Banana	endoplasmic reticulum	73.25	76.61
EES13179	Sorghum	endoplasmic reticulum, plasma membrane	74.56	76.58
AT5G22360.1	Thale cress	plasma membrane	74.12	76.47
Bra020187.1-P	Field mustard	endoplasmic reticulum	74.12	76.47
CDY09133	Canola	endoplasmic reticulum	74.12	76.47
CDX70999	Canola	endoplasmic reticulum	73.68	76.02
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	72.37	75.69
Bra006623.1-P	Field mustard	endoplasmic reticulum, plasma membrane	73.25	75.57
CDX88799	Canola	plasma membrane	73.25	75.57
TraesCS7A01G328000.1	Wheat	plasma membrane	73.25	75.23
TraesCS7B01G228700.1	Wheat	plasma membrane	73.25	75.23
TraesCS7D01G324800.1	Wheat	plasma membrane	72.81	74.77
HORVU7Hr1G078500.1	Barley	plasma membrane	72.81	74.77
Os10t0154000-01	Rice	plasma membrane	73.68	74.34
Solyc06g074250.2.1	Tomato	endoplasmic reticulum, plasma membrane	84.65	73.95
PGSC0003DMT400067225	Potato	mitochondrion	49.12	50.91
PGSC0003DMT400076273	Potato	cytosol	34.21	35.29
PGSC0003DMT400006104	Potato	cytosol, extracellular	33.77	35.0
PGSC0003DMT400051941	Potato	cytosol	32.89	34.09
PGSC0003DMT400026763	Potato	cytosol	32.46	33.33
PGSC0003DMT400061574	Potato	endoplasmic reticulum, mitochondrion, plasma membrane	32.02	30.42
PGSC0003DMT400029447	Potato	cytosol	27.63	21.28
PGSC0003DMT400043452	Potato	cytosol	24.12	14.91

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:102600875	MapMan:22.7.5.1	Gene3D:3.30.450.50	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006810	GO:GO:0006950	GO:GO:0008150
GO:GO:0009628	GO:GO:0009651	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:IPR001388
InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	UniProt:M1A5D2	PFAM:PF00957	PFAM:PF13774
EnsemblPlantsGene:PGSC0003DMG401005885	PGSC:PGSC0003DMG401005885	EnsemblPlants:PGSC0003DMT400015063	PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136
PANTHER:PTHR21136:SF165	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin	UniParc:UPI0002950B67

Description

Vesicle-associated membrane protein [Source:PGSC_GENE;Acc:PGSC0003DMG401005885]

Coordinates

chr6:-:54780112..54782644

Molecular Weight (calculated)

26070.7 Da

IEP (calculated)

10.103

GRAVY (calculated)

-0.188

Length

228 amino acids

Sequence
(BLAST)

001: MAIVYAVVAR GTTVLAEFSA VTGNTGAVAR RILEKLPDET ESRLCFSQDR YIFHILRSNG ITFLCMANET FGRRIPFSYL EDIQMRFMKN YGKVASYAPA
101: YSMNDEFSRV LHQQMEFFSS NPSADTLNRV RGEVETTSMY IQIRTIMVDN IEKILERGDR IELLVDKTGT MQDNAFHFRK QSKRLRRALW MKNAKLLPTF
201: SANNAVTLVL MKAYLKVCLS SKASRSAN

Best Arabidopsis Sequence Match ( AT5G22360.1 )
(BLAST)

001: MAIVYAVVAR GTVVLAEFSA VTGNTGAVVR RILEKLSPEI SDERLCFSQD RYIFHILRSD GLTFLCMAND TFGRRVPFSY LEEIHMRFMK NYGKVAHNAP
101: AYAMNDEFSR VLHQQMEFFS SNPSVDTLNR VRGEVSEIRS VMVENIEKIM ERGDRIELLV DKTATMQDSS FHFRKQSKRL RRALWMKNAK LLVLLTCLIV
201: FLLYIIIASF CGGITLPSCR S

Arabidopsis Description

VAMP714Vesicle-associated membrane protein 714 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMR5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.