Factsheet for PGSC0003DMT400051941

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g083530.2.1	Tomato	plastid	98.64	98.64
PGSC0003DMT400006104	Potato	cytosol, extracellular	91.36	91.36
VIT_07s0005g05790.t01	Wine grape	cytosol, vacuole	90.45	90.87
PGSC0003DMT400076273	Potato	cytosol	83.18	82.81
PGSC0003DMT400026763	Potato	cytosol	82.27	81.53
PGSC0003DMT400061574	Potato	endoplasmic reticulum, mitochondrion, plasma membrane	61.36	56.25
PGSC0003DMT400029447	Potato	cytosol	71.36	53.04
PGSC0003DMT400067225	Potato	mitochondrion	37.73	37.73
PGSC0003DMT400015063	Potato	plastid	34.09	32.89
PGSC0003DMT400043452	Potato	cytosol	50.45	30.08

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:102602618	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:IPR001388
InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	UniProt:M1BSH7	PFAM:PF00957	PFAM:PF13774
EnsemblPlantsGene:PGSC0003DMG400020158	PGSC:PGSC0003DMG400020158	EnsemblPlants:PGSC0003DMT400051941	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859
PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF92	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356
InterPro:Synaptobrevin	TMHMM:TMhelix	UniParc:UPI0002964824	RefSeq:XP_006352702.1	SEG:seg	:

Description

Vesicle-associated membrane protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020158]

Coordinates

chr6:+:58457801..58460751

Molecular Weight (calculated)

24695.1 Da

IEP (calculated)

8.773

GRAVY (calculated)

-0.087

Length

220 amino acids

Sequence
(BLAST)

001: MGQQSLIYSF VARGTVILAE YTEFTGNFTS IASQCLQKLP ASNNKFTYNC DGHTFNYLVD DGFTYCVVAV ESVGRQVPIA FLERVKDDFT KKYGGGKAAT
101: AVANSLNKEF GPKIKDQMQY CVDHPEEINK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFKTQG TKVRRKMWLQ NMKIKLIVLG
201: IILALILVIV LSICHGFNCH

Best Arabidopsis Sequence Match ( AT1G04760.2 )
(BLAST)

001: MGQQSLIYSF VARGTVILAE YTEFKGNFTS VAAQCLQKLP SSNNKFTYNC DGHTFNYLAD NGFTYCVVVI ESAGRQIPMA FLERVKEDFN KRYGGGKAST
101: AKANSLNKEF GSKLKEHMQY CADHPEEISK LSKVKAQVTE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTQG TKMKRKLWFE NMKIKLIVFG
201: IIVALILIII LSVCHGFKCT

Arabidopsis Description

VAMP726Putative vesicle-associated membrane protein 726 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAS5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.