Factsheet for PGSC0003DMT400043452

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g098170.1.1	Tomato	cytosol	57.45	69.51
CDY59642	Canola	endoplasmic reticulum	26.29	54.49
CDX79466	Canola	endoplasmic reticulum	25.75	53.98
Os07t0194000-01	Rice	plasma membrane	31.98	53.64
Os03t0803000-01	Rice	plasma membrane	31.98	53.64
CDY19156	Canola	cytosol	20.87	53.47
Zm00001d007767_P001	Maize	extracellular	31.98	53.15
EER96027	Sorghum	extracellular	31.98	53.15
GSMUA_Achr4P22260_001	Banana	cytosol, extracellular	31.44	52.97
GSMUA_Achr8P15290_001	Banana	cytosol, endoplasmic reticulum	31.44	52.97
CDX86608	Canola	endoplasmic reticulum	31.44	52.97
GSMUA_Achr2P17740_001	Banana	cytosol	31.17	52.51
GSMUA_Achr9P11030_001	Banana	cytosol	31.17	52.51
CDY15521	Canola	endoplasmic reticulum	31.17	52.51
CDY18254	Canola	endoplasmic reticulum	31.17	52.27
VIT_05s0136g00290.t01	Wine grape	extracellular	31.17	52.27
Bra015345.1-P	Field mustard	endoplasmic reticulum	31.17	52.27
OQU90815	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	31.17	52.27
CDY10053	Canola	endoplasmic reticulum	31.17	52.27
CDX89793	Canola	endoplasmic reticulum	31.17	52.27
Bra030588.1-P	Field mustard	endoplasmic reticulum	30.89	52.05
Bra032493.1-P	Field mustard	cytosol	30.89	51.82
CDY06150	Canola	cytosol	30.89	51.82
CDY19154	Canola	cytosol	30.89	51.82
GSMUA_Achr9P25440_001	Banana	cytosol, vacuole	30.62	51.6
GSMUA_Achr7P01760_001	Banana	plasma membrane	30.62	51.6
CDY23768	Canola	endoplasmic reticulum, extracellular, plasma membrane	23.31	51.5
CDY12188	Canola	cytosol	30.62	51.36
PGSC0003DMT400006104	Potato	cytosol, extracellular	30.62	51.36
Bra005568.1-P	Field mustard	cytosol	30.62	51.36
CDX79510	Canola	endoplasmic reticulum	30.89	51.35
Bra022926.1-P	Field mustard	endoplasmic reticulum	30.89	51.35
CDX84702	Canola	endoplasmic reticulum	30.89	51.35
Bra005523.1-P	Field mustard	cytosol, extracellular	30.89	51.12
CDY19450	Canola	cytosol, extracellular	30.89	51.12
CDY17139	Canola	cytosol, extracellular	30.89	51.12
Bra021804.1-P	Field mustard	cytosol	30.35	50.91
CDX84731	Canola	cytosol	30.35	50.91
Bra022893.1-P	Field mustard	cytosol	30.35	50.91
PGSC0003DMT400076273	Potato	cytosol	30.35	50.68
PGSC0003DMT400051941	Potato	cytosol	30.08	50.45
TraesCS5D01G459900.1	Wheat	vacuole	30.35	50.45
TraesCS5B01G457700.1	Wheat	vacuole	30.35	50.45
HORVU5Hr1G107510.2	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	30.35	50.22
TraesCS5A01G449900.1	Wheat	unclear	30.35	50.22
CDY48531	Canola	cytosol	29.54	49.55
PGSC0003DMT400026763	Potato	cytosol	29.27	48.65
Bra021828.1-P	Field mustard	endoplasmic reticulum, extracellular	27.91	47.03
CDY37751	Canola	endoplasmic reticulum, extracellular, plasma membrane	27.64	46.58
Zm00001d019091_P002	Maize	vacuole	31.17	44.06
GSMUA_Achr8P03260_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	25.75	43.18
Zm00001d013055_P002	Maize	extracellular, plasma membrane	26.29	41.1
AT3G24890.2	Thale cress	cytosol	12.2	36.29
PGSC0003DMT400061574	Potato	endoplasmic reticulum, mitochondrion, plasma membrane	23.31	35.83
PGSC0003DMT400029447	Potato	cytosol	22.76	28.38
CDY59643	Canola	extracellular	5.69	28.38
CDX79465	Canola	extracellular	6.5	27.91
PGSC0003DMT400067225	Potato	mitochondrion	15.45	25.91
TraesCS3B01G193500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	30.08	24.78
PGSC0003DMT400015063	Potato	plastid	14.91	24.12
CDY23767	Canola	extracellular	5.96	20.56

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.5.1	Gene3D:3.30.450.50	InterPro:F-box-assoc_interact_dom	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:IPR001388	InterPro:IPR010908
InterPro:Longin-like_dom_sf	InterPro:Longin_dom	UniProt:M1BEN0	PFAM:PF00957	PFAM:PF13774	EnsemblPlantsGene:PGSC0003DMG400016869
PGSC:PGSC0003DMG400016869	EnsemblPlants:PGSC0003DMT400043452	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892
PANTHER:PTHR21136	PANTHER:PTHR21136:SF120	SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin	TIGRFAMs:TIGR01640
UniParc:UPI00029678FD	SEG:seg	:	:	:	:

Description

Vesicle-associated membrane protein 725 [Source:PGSC_GENE;Acc:PGSC0003DMG400016869]

Coordinates

chr12:+:59019331..59024914

Molecular Weight (calculated)

41699.6 Da

IEP (calculated)

4.763

GRAVY (calculated)

-0.260

Length

369 amino acids

Sequence
(BLAST)

001: MSPFKSLDYE SPSSFEDHVD DDSAIVDLLY PSMDEGLESN NVEIIGSCNG LICLLLCDTN KISLWNPSTR VSRDLPSLTC NFHNDCPIFN GFGYDSINDT
101: YKVVRGTLDG IVDVFSTSGE RWRRIQGFKD ISIFDEEQGI FFNGTLHWLG YNVINETKKE KTIVTLDLGQ ETFGVMKQPI LEHDENVNFH NVDVLQGCLS
201: LLNKAYCVVA TESAGREIPL AFLDRVKNDF SKKYAGGKAA TASAKSLNRE FGSKLKEHMK YCCDHPEEIS KLSKVKAQVS EVKGVMMENI EKVLDRGEKI
301: ELLVDKTDNL RSQTYVYVPC QKYCIQLNQM VIGSIRLCGP VVDVKLTNQS ECFPYNWSLA HEELDWLVF

Best Arabidopsis Sequence Match ( AT1G04750.1 )
(BLAST)

001: MAQQSLIYSF VARGTVILVE FTDFKGNFTS IAAQCLQKLP SSNNKFTYNC DGHTFNYLVE DGFTYCVVAV DSAGRQIPMS FLERVKEDFN KRYGGGKAAT
101: AQANSLNKEF GSKLKEHMQY CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTTG TQMRRKMWLQ NMKIKLIVLA
201: IIIALILIIV LSVCHGFKC

Arabidopsis Description

VAMP721Putative vesicle-associated membrane protein, synaptobrevin 7B [Source:UniProtKB/TrEMBL;Acc:Q681L9]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.