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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, plastid
BaCelLo:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY48527 Canola cytosol 36.81 73.61
CDX79466 Canola endoplasmic reticulum 86.81 71.02
CDY59642 Canola endoplasmic reticulum 87.5 70.79
CDY23768 Canola endoplasmic reticulum, extracellular, plasma membrane 68.75 59.28
CDY48531 Canola cytosol 89.58 58.64
CDY19154 Canola cytosol 89.58 58.64
Bra022893.1-P Field mustard cytosol 88.19 57.73
CDX84731 Canola cytosol 88.19 57.73
CDY12188 Canola cytosol 87.5 57.27
AT1G04760.2 Thale cress cytosol 82.64 54.09
Os07t0194000-01 Rice plasma membrane 79.86 52.27
GSMUA_Achr2P17740_001 Banana cytosol 79.17 52.05
CDY18254 Canola endoplasmic reticulum 79.17 51.82
CDX89793 Canola endoplasmic reticulum 79.17 51.82
GSMUA_Achr4P22260_001 Banana cytosol, extracellular 78.47 51.6
CDX86608 Canola endoplasmic reticulum 78.47 51.6
CDY06150 Canola cytosol 78.47 51.36
CDY10053 Canola endoplasmic reticulum 78.47 51.36
VIT_05s0136g00290.t01 Wine grape extracellular 78.47 51.36
CDX84702 Canola endoplasmic reticulum 79.17 51.35
CDX79510 Canola endoplasmic reticulum 79.17 51.35
CDY15521 Canola endoplasmic reticulum 77.78 51.14
CDY19450 Canola cytosol, extracellular 79.17 51.12
CDY17139 Canola cytosol, extracellular 79.17 51.12
OQU90815 Sorghum cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 77.78 50.91
Zm00001d007767_P001 Maize extracellular 78.47 50.9
EER96027 Sorghum extracellular 78.47 50.9
GSMUA_Achr8P15290_001 Banana cytosol, endoplasmic reticulum 77.08 50.68
Os03t0803000-01 Rice plasma membrane 77.08 50.45
GSMUA_Achr9P25440_001 Banana cytosol, vacuole 76.39 50.23
GSMUA_Achr7P01760_001 Banana plasma membrane 76.39 50.23
TraesCS5B01G457700.1 Wheat vacuole 77.08 50.0
TraesCS5D01G459900.1 Wheat vacuole 77.08 50.0
TraesCS5A01G449900.1 Wheat unclear 77.08 49.78
HORVU5Hr1G107510.2 Barley cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 77.08 49.78
GSMUA_Achr9P11030_001 Banana cytosol 75.69 49.77
CDY37751 Canola endoplasmic reticulum, extracellular, plasma membrane 69.44 45.66
CDY22757 Canola cytosol 60.42 43.07
AT2G32670.1 Thale cress endoplasmic reticulum, golgi 84.03 42.46
Zm00001d019091_P002 Maize vacuole 76.39 42.15
CDY44179 Canola cytosol 63.89 41.44
CDY22900 Canola cytosol, plasma membrane, plastid 63.89 41.44
Zm00001d013055_P002 Maize extracellular, plasma membrane 66.67 40.68
GSMUA_Achr8P03260_001 Banana cytosol, mitochondrion, plasma membrane, plastid 57.64 37.73
CDY13199 Canola plasma membrane 45.14 32.66
CDX67594 Canola cytosol 53.47 31.95
CDY07551 Canola cytosol 52.78 31.67
CDX76153 Canola cytosol 52.78 31.41
CDX78228 Canola cytosol, plasma membrane 52.08 31.25
CDX73490 Canola plasma membrane 51.39 30.71
CDX69781 Canola plasma membrane 37.5 24.43
CDX68821 Canola endoplasmic reticulum, plasma membrane 36.81 24.09
CDX97084 Canola plasma membrane 36.81 23.98
CDX75224 Canola endoplasmic reticulum, plasma membrane 36.11 23.64
CDY61387 Canola endoplasmic reticulum, plasma membrane 35.42 23.29
CDY09133 Canola endoplasmic reticulum 35.42 23.08
CDX70999 Canola endoplasmic reticulum 35.42 23.08
CDX88799 Canola plasma membrane 34.72 22.62
PGSC0003DMT400043452 Potato cytosol 53.47 20.87
TraesCS3B01G193500.1 Wheat cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 61.81 19.87
CDY23767 Canola extracellular 7.64 10.28
CDX79465 Canola extracellular 2.78 4.65
Solyc12g098170.1.1 Tomato cytosol 9.72 4.59
CDY59643 Canola extracellular 1.39 2.7
Protein Annotations
Gene3D:1.20.5.110MapMan:22.7.5.1Gene3D:3.30.450.50GO:A0A078G1H4UniProt:A0A078G1H4EnsemblPlants:CDY19156
ProteinID:CDY19156ProteinID:CDY19156.1GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020
GO:GO:0016021GO:GO:0016192EnsemblPlantsGene:GSBRNA2T00006442001InterPro:IPR001388InterPro:IPR010908InterPro:Longin_dom
PFAM:PF00957PIRSF:PIRSF005409PRINTS:PR00219ScanProsite:PS00417PFscan:PS50859PFscan:PS50892
PANTHER:PTHR21136PANTHER:PTHR21136:SF92SUPFAM:SSF58038InterPro:SynaptobrevinInterPro:Synaptobrevin/VAMPTMHMM:TMhelix
UniParc:UPI0004EE42D2SEG:seg::::
Description
BnaA04g18960DBnaA04g18960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1H4]
Coordinates
chrLK032092:+:565760..566556
Molecular Weight (calculated)
16431.4 Da
IEP (calculated)
9.914
GRAVY (calculated)
-0.165
Length
144 amino acids
Sequence
(BLAST)
001: MTFLERVKVD FSKRYGGGKA STAKPNSLNK EFGYLSSTEH MQYCVDHPAE INKLAKVKAQ VTEVKGVMME NIEKVLDRGE KIELLVDKTE DLRSHAQDFR
101: TQGTKIRRKM WWENMKIKLI VVGITIALIL IIIIISVCPG FKCT
Best Arabidopsis Sequence Match ( AT1G04750.2 )
(BLAST)
001: MSFLERVKED FNKRYGGGKA ATAQANSLNK EFGSKLKEHM QYCMDHPDEI SKLAKVKAQV SEVKGVMMEN IEKVLDRGEK IELLVDKTEN LRSQAQDFRT
101: TGTQMRRKMW LQNMKIKLIV LAIIIALILI IVLSVCHGFK C
Arabidopsis Description
VAMP721Putative vesicle-associated membrane protein, synaptobrevin 7B [Source:UniProtKB/TrEMBL;Acc:Q681L9]
SUBAcon: [cytosol,endoplasmic reticulum,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.