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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • mitochondrion 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
PProwler:mitochondrion
TargetP:secretory
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra014823.1-P Field mustard golgi 99.17 99.17
CDX67594 Canola cytosol 96.69 97.1
CDY07551 Canola cytosol 95.87 96.67
CDX78228 Canola cytosol, plasma membrane 95.45 96.25
CDX73490 Canola plasma membrane 95.45 95.85
AT3G54300.3 Thale cress cytosol 94.63 95.42
KRH36005 Soybean endoplasmic reticulum 87.19 88.66
CDY13199 Canola plasma membrane 72.31 87.94
Solyc11g006780.1.1 Tomato cytosol, mitochondrion, plasma membrane 86.78 87.5
PGSC0003DMT400061574 Potato endoplasmic reticulum, mitochondrion, plasma membrane 85.95 86.67
VIT_13s0101g00410.t01 Wine grape endoplasmic reticulum, golgi 83.06 84.1
GSMUA_Achr8P32930_001 Banana cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 78.51 79.83
Zm00001d031942_P003 Maize plastid 74.38 74.69
KXG25383 Sorghum plastid 74.38 74.69
TraesCS7D01G278900.1 Wheat plasma membrane, plastid 73.55 73.55
Os08t0558600-01 Rice extracellular 73.14 73.44
TraesCS7B01G181100.1 Wheat cytosol, plastid 73.14 73.14
TraesCS7A01G279100.1 Wheat cytosol, plastid 73.14 73.14
KRG90750 Soybean cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 75.62 72.33
CDY59643 Canola extracellular 19.01 62.16
CDX86608 Canola endoplasmic reticulum 55.79 61.64
CDY15521 Canola endoplasmic reticulum 55.79 61.64
CDX89793 Canola endoplasmic reticulum 55.79 61.36
CDY18254 Canola endoplasmic reticulum 55.79 61.36
CDY17139 Canola cytosol, extracellular 56.2 60.99
CDX84731 Canola cytosol 55.37 60.91
CDY12188 Canola cytosol 55.37 60.91
CDX84702 Canola endoplasmic reticulum 55.79 60.81
CDX79510 Canola endoplasmic reticulum 55.79 60.81
CDY19450 Canola cytosol, extracellular 55.79 60.54
CDY19154 Canola cytosol 54.55 60.0
CDY06150 Canola cytosol 54.55 60.0
CDY48527 Canola cytosol 17.77 59.72
CDY10053 Canola endoplasmic reticulum 54.13 59.55
CDY48531 Canola cytosol 53.31 58.64
CDX79466 Canola endoplasmic reticulum 39.67 54.55
CDY37751 Canola endoplasmic reticulum, extracellular, plasma membrane 48.76 53.88
CDY19156 Canola cytosol 31.41 52.78
CDY44179 Canola cytosol 48.35 52.7
CDX79465 Canola extracellular 18.59 52.33
CDY22900 Canola cytosol, plasma membrane, plastid 47.93 52.25
CDY59642 Canola endoplasmic reticulum 38.43 52.25
EES09956 Sorghum cytosol, mitochondrion, nucleus, plastid 17.36 50.6
CDY23768 Canola endoplasmic reticulum, extracellular, plasma membrane 33.06 47.9
CDY23767 Canola extracellular 21.07 47.66
CDY22757 Canola cytosol 33.47 40.1
CDY61387 Canola endoplasmic reticulum, plasma membrane 33.47 36.99
CDX69781 Canola plasma membrane 33.06 36.2
CDX97084 Canola plasma membrane 33.06 36.2
CDX75224 Canola endoplasmic reticulum, plasma membrane 32.64 35.91
CDX68821 Canola endoplasmic reticulum, plasma membrane 32.23 35.45
CDX70999 Canola endoplasmic reticulum 31.82 34.84
CDY09133 Canola endoplasmic reticulum 31.82 34.84
CDX88799 Canola plasma membrane 30.99 33.94
Protein Annotations
Gene3D:1.20.5.110MapMan:22.7.5.1Gene3D:3.30.450.50GO:A0A078CM79EnsemblPlants:CDX76153ProteinID:CDX76153
ProteinID:CDX76153.1GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021
GO:GO:0016192EnsemblPlantsGene:GSBRNA2T00126446001InterPro:IPR001388InterPro:IPR010908InterPro:Longin-like_dom_sfInterPro:Longin_dom
PFAM:PF00957PFAM:PF13774PRINTS:PR00219ScanProsite:PS00417PFscan:PS50859PFscan:PS50892
PANTHER:PTHR21136PANTHER:PTHR21136:SF169SMART:SM01270SUPFAM:SSF58038SUPFAM:SSF64356InterPro:Synaptobrevin
TMHMM:TMhelixUniParc:UPI0004EF004DSEG:seg:::
Description
BnaA04g04170D
Coordinates
chrLK031806:+:1418345..1420601
Molecular Weight (calculated)
27650.3 Da
IEP (calculated)
6.361
GRAVY (calculated)
-0.295
Length
242 amino acids
Sequence
(BLAST)
001: MSQQKGLIYS FVAKGTVVLA EHTPYSGNFS TIAVQCLQKL PKNSSKYTYS CDGHTFNFLV ENNGFVFLVV ADESTGRSVP FVFLERVKED FKKRYEASIK
101: NDEPHPLADD DEDDDLFGDR FSIAYNLDRE FGPILKEHMQ YCMSHPEEMS KLSKLKAQIN DVKGIMMDNI EKVLDRGEKI ELLVDKTENL QFQADSFQRQ
201: GRQLRRKMWI QSLQMKLMVG GAILSFILIV WVVACGGFKC SS
Best Arabidopsis Sequence Match ( AT3G54300.1 )
(BLAST)
001: MSQKGLIYSF VAKGTVVLAE HTPYSGNFST IAVQCLQKLP TNSSKYTYSC DGHTFNFLVD NGFVFLVVAD ESTGRSVPFV FLERVKEDFK KRYEASIKND
101: ERHPLADEDE DDDLFGDRFS VAYNLDREFG PILKEHMQYC MSHPEEMSKL SKLKAQITEV KGIMMDNIEK VLDRGEKIEL LVDKTENLQF QADSFQRQGR
201: QLRRKMWLQS LQMKLMVAGA VFSFILIVWV VACGGFKCSS
Arabidopsis Description
VAMP727Vesicle-associated membrane protein 727 [Source:UniProtKB/Swiss-Prot;Acc:Q9M376]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.