Factsheet for Solyc11g006780.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, cytosol

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 3
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061574	Potato	endoplasmic reticulum, mitochondrion, plasma membrane	97.92	97.92
KRH36005	Soybean	endoplasmic reticulum	88.75	89.5
CDX67594	Canola	cytosol	87.92	87.55
Bra003177.1-P	Field mustard	cytosol	87.5	87.14
CDY07551	Canola	cytosol	87.08	87.08
AT3G54300.3	Thale cress	cytosol	87.08	87.08
CDX76153	Canola	cytosol	87.5	86.78
Bra014823.1-P	Field mustard	golgi	86.67	85.95
Bra007063.1-P	Field mustard	cytosol, plasma membrane	85.83	85.83
CDX78228	Canola	cytosol, plasma membrane	85.83	85.83
VIT_13s0101g00410.t01	Wine grape	endoplasmic reticulum, golgi	85.0	85.36
CDX73490	Canola	plasma membrane	85.42	85.06
GSMUA_Achr8P32930_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	78.75	79.41
CDY13199	Canola	plasma membrane	64.58	77.89
TraesCS7D01G278900.1	Wheat	plasma membrane, plastid	75.42	74.79
Os08t0558600-01	Rice	extracellular	75.0	74.69
TraesCS7A01G279100.1	Wheat	cytosol, plastid	74.58	73.97
TraesCS7B01G181100.1	Wheat	cytosol, plastid	74.58	73.97
KXG25383	Sorghum	plastid	74.17	73.86
Zm00001d031942_P003	Maize	plastid	73.75	73.44
KRG90750	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	75.83	71.94
Solyc06g083530.2.1	Tomato	plastid	56.67	61.82
Solyc09g061620.2.1	Tomato	nucleus, plastid	56.67	61.82
Solyc02g069150.2.1	Tomato	nucleus	55.83	60.36
Solyc09g091610.2.1	Tomato	plastid	54.58	59.28
Solyc12g098180.1.1	Tomato	cytosol, vacuole	54.17	58.82
EES09956	Sorghum	cytosol, mitochondrion, nucleus, plastid	18.33	53.01
Solyc01g066940.2.1	Tomato	cytosol	48.33	52.49
Solyc06g065950.2.1	Tomato	endoplasmic reticulum, nucleus	34.58	37.73
Solyc06g074250.2.1	Tomato	endoplasmic reticulum, plasma membrane	34.17	31.42
Solyc12g098170.1.1	Tomato	cytosol	12.5	9.84

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.5.1	Gene3D:3.30.450.50	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0006623	GO:GO:0006810	GO:GO:0006887	GO:GO:0006906	GO:GO:0007033
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192
GO:GO:0031201	InterPro:IPR001388	InterPro:IPR010908	UniProt:K4D4T9	InterPro:Longin-like_dom_sf	InterPro:Longin_dom
PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892
PANTHER:PTHR21136	PANTHER:PTHR21136:SF169	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	EnsemblPlantsGene:Solyc11g006780.1
EnsemblPlants:Solyc11g006780.1.1	InterPro:Synaptobrevin	TMHMM:TMhelix	UniParc:UPI0002769F52	SEG:seg	:

Description

Vesicle-associated membrane protein 727 [Source:Projected from Arabidopsis thaliana (AT3G54300) UniProtKB/Swiss-Prot;Acc:Q9M376]

Coordinates

chr11:+:1363332..1367317

Molecular Weight (calculated)

27367.9 Da

IEP (calculated)

6.037

GRAVY (calculated)

-0.270

Length

240 amino acids

Sequence
(BLAST)

001: MNPKGLIYSF VARGTVVLAE HTPYSGNFST IAVQCLQKLP SNSSKYTYSC DGHTFNFLLD SGFVFLVVAD EPTGRSVPFV FLERVKDDFK KRYGSSIKND
101: GDPHPLADGD EEDDDLFGDR FSIAYNLDRE FGPKLKEHME YCMNHPDEMS KLSKLKAQIT EVKGIMMDNI EKVLDRGEKI ELLVDKTENL QFQADSFQRQ
201: GRQLRRKMWF QNLQMKLMVG GAIVIFIIIV WLFACGGFSC

Best Arabidopsis Sequence Match ( AT3G54300.1 )
(BLAST)

001: MSQKGLIYSF VAKGTVVLAE HTPYSGNFST IAVQCLQKLP TNSSKYTYSC DGHTFNFLVD NGFVFLVVAD ESTGRSVPFV FLERVKEDFK KRYEASIKND
101: ERHPLADEDE DDDLFGDRFS VAYNLDREFG PILKEHMQYC MSHPEEMSKL SKLKAQITEV KGIMMDNIEK VLDRGEKIEL LVDKTENLQF QADSFQRQGR
201: QLRRKMWLQS LQMKLMVAGA VFSFILIVWV VACGGFKCSS

Arabidopsis Description

VAMP727Vesicle-associated membrane protein 727 [Source:UniProtKB/Swiss-Prot;Acc:Q9M376]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.