Factsheet for VIT_13s0101g00410.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
cytosol 1
extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	golgi
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36005	Soybean	endoplasmic reticulum	88.7	89.08
PGSC0003DMT400061574	Potato	endoplasmic reticulum, mitochondrion, plasma membrane	85.77	85.42
Solyc11g006780.1.1	Tomato	cytosol, mitochondrion, plasma membrane	85.36	85.0
CDX67594	Canola	cytosol	84.52	83.82
CDY07551	Canola	cytosol	84.1	83.75
AT3G54300.3	Thale cress	cytosol	84.1	83.75
Bra003177.1-P	Field mustard	cytosol	84.1	83.4
CDX76153	Canola	cytosol	84.1	83.06
CDX73490	Canola	plasma membrane	83.68	82.99
Bra014823.1-P	Field mustard	golgi	83.26	82.23
CDX78228	Canola	cytosol, plasma membrane	82.43	82.08
Bra007063.1-P	Field mustard	cytosol, plasma membrane	82.43	82.08
GSMUA_Achr8P32930_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	81.59	81.93
Os08t0558600-01	Rice	extracellular	78.66	78.01
CDY13199	Canola	plasma membrane	64.85	77.89
TraesCS7D01G278900.1	Wheat	plasma membrane, plastid	78.24	77.27
KXG25383	Sorghum	plastid	77.82	77.18
TraesCS7A01G279100.1	Wheat	cytosol, plastid	77.41	76.45
TraesCS7B01G181100.1	Wheat	cytosol, plastid	77.41	76.45
Zm00001d031942_P003	Maize	plastid	76.57	75.93
KRG90750	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	76.57	72.33
VIT_05s0136g00290.t01	Wine grape	extracellular	60.67	65.91
VIT_07s0005g05790.t01	Wine grape	cytosol, vacuole	59.0	64.38
VIT_01s0011g01660.t01	Wine grape	endoplasmic reticulum	56.9	61.54
VIT_05s0020g01430.t01	Wine grape	cytosol	51.46	55.66
EES09956	Sorghum	cytosol, mitochondrion, nucleus, plastid	18.41	53.01
VIT_04s0008g05650.t01	Wine grape	extracellular	34.31	37.27
VIT_06s0080g00800.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	31.8	34.55

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100243052	wikigene:100243052	MapMan:22.7.5.1	Gene3D:3.30.450.50	ProteinID:CBI32213
ProteinID:CBI32213.3	UniProt:D7TNZ0	EMBL:FN596004	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006887	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	InterPro:IPR001388	InterPro:IPR010908
EntrezGene:LOC100243052	wikigene:LOC100243052	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	PFAM:PF00957	PFAM:PF13774
PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF169
SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin	TIGR:TC70481	TMHMM:TMhelix
UniParc:UPI00015CCEC1	ArrayExpress:VIT_13s0101g00410	EnsemblPlantsGene:VIT_13s0101g00410	EnsemblPlants:VIT_13s0101g00410.t01	unigene:Vvi.2111	RefSeq:XP_002269134
RefSeq:XP_002269134.1	RefSeq:XP_010658865.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr13:+:12225242..12232739

Molecular Weight (calculated)

27276.9 Da

IEP (calculated)

6.670

GRAVY (calculated)

-0.230

Length

239 amino acids

Sequence
(BLAST)

001: MSQKGLIYSF VAKGTVVLAE HTSFSGNFST IAVQCLQKLP SNSSKYTYSC DGHTFNFLID SGFVFLVVAD ESAGRGAPFV FLERVKDDFK QRYGGSIRSD
101: GPHPLADEDD DDDDLFEDRF SIAYNLDREF GPKLKEHMQY CMNHPEEISK LSKLKAQITE VKGIMMDNIE KVLDRGERIE LLVDKTENLQ FQADSFQRQG
201: RQLRRKMWLQ NLRLKLMVGG IVLVLIIILW LIACKGFKC

Best Arabidopsis Sequence Match ( AT3G54300.1 )
(BLAST)

001: MSQKGLIYSF VAKGTVVLAE HTPYSGNFST IAVQCLQKLP TNSSKYTYSC DGHTFNFLVD NGFVFLVVAD ESTGRSVPFV FLERVKEDFK KRYEASIKND
101: ERHPLADEDE DDDLFGDRFS VAYNLDREFG PILKEHMQYC MSHPEEMSKL SKLKAQITEV KGIMMDNIEK VLDRGEKIEL LVDKTENLQF QADSFQRQGR
201: QLRRKMWLQS LQMKLMVAGA VFSFILIVWV VACGGFKCSS

Arabidopsis Description

VAMP727Vesicle-associated membrane protein 727 [Source:UniProtKB/Swiss-Prot;Acc:Q9M376]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.