Factsheet for VIT_04s0008g05650.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
mitochondrion 1
endoplasmic reticulum 4
nucleus 1
extracellular 3
vacuole 3
plasma membrane 4
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

extracellular: 27664331

msms PMID: 27664331 doi

P Pérez-Bermúdez, J Blesa, JM Soriano, A Marcilla

Departament de Biologia Vegetal, Facultat de Farmàcia, Universitat de València, Burjassot, Valencia, Spain., Grupo de Ciencias de la Alimentación Basada en la Evidencia y Experimentación (CiAlBEx), Instituto de Ciencias de los Materiales, Parque Científico, Universitat de València, Paterna, Spain; Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain., Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain; Àrea de Parasitologia, Departament de Farmàcia i Tecnologia Farmacèutica i Parasitologia, Universitat de València, Burjassot, Valencia, Spain. Electronic address: antonio.marcilla@uv.es.

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g01850.t01
VIT_14s0108g01200.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32150.1	VIT_14s0108g01200.t01	AT5G39510.1	24556609
AT4G32150.1	VIT_02s0012g01850.t01	AT5G46860.1	24556609

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067225	Potato	mitochondrion	90.45	90.45
Solyc06g065950.2.1	Tomato	endoplasmic reticulum, nucleus	89.55	89.55
CDY61387	Canola	endoplasmic reticulum, plasma membrane	85.0	85.39
Bra040067.1-P	Field mustard	endoplasmic reticulum, plasma membrane	85.0	85.39
CDX75224	Canola	endoplasmic reticulum, plasma membrane	84.09	84.09
AT4G32150.1	Thale cress	golgi, plasma membrane	83.64	84.02
CDX68821	Canola	endoplasmic reticulum, plasma membrane	83.64	83.64
CDX69781	Canola	plasma membrane	83.18	82.81
GSMUA_Achr6P35140_001	Banana	plasma membrane	82.27	82.27
CDX97084	Canola	plasma membrane	82.27	81.9
AT2G25340.1	Thale cress	endoplasmic reticulum, plasma membrane	81.36	81.74
Bra008987.1-P	Field mustard	mitochondrion	81.82	81.45
GSMUA_Achr9P09180_001	Banana	endoplasmic reticulum, plasma membrane	80.45	80.45
AT5G11150.2	Thale cress	golgi, plasma membrane	78.64	76.55
OQU75937	Sorghum	plasma membrane	75.91	75.57
TraesCS7B01G037300.1	Wheat	plasma membrane, plastid	72.73	72.4
TraesCS7A01G136300.1	Wheat	plasma membrane, plastid	72.73	72.4
Os06t0174400-01	Rice	plasma membrane	72.73	72.4
TraesCS7D01G136300.1	Wheat	endoplasmic reticulum, plasma membrane	72.27	71.95
Os02t0803600-01	Rice	plasma membrane	71.36	69.47
KRH20159	Soybean	plastid	70.45	69.2
KRH03646	Soybean	plasma membrane	70.45	68.89
EES05972	Sorghum	cytosol	70.91	68.42
Zm00001d018408_P001	Maize	cytosol	69.55	67.7
TraesCS6A01G371800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	70.91	66.95
TraesCS6D01G355800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	70.91	66.95
TraesCS6B01G409400.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	70.45	66.52
Zm00001d037483_P002	Maize	plasma membrane	75.91	65.75
HORVU7Hr1G028250.1	Barley	peroxisome, plasma membrane	70.91	63.41
VIT_06s0080g00800.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	57.27	57.27
Bra011325.1-P	Field mustard	endoplasmic reticulum	79.09	47.67
VIT_01s0011g01660.t01	Wine grape	endoplasmic reticulum	38.64	38.46
VIT_07s0005g05790.t01	Wine grape	cytosol, vacuole	37.73	37.9
VIT_05s0136g00290.t01	Wine grape	extracellular	35.91	35.91
VIT_13s0101g00410.t01	Wine grape	endoplasmic reticulum, golgi	37.27	34.31
VIT_05s0020g01430.t01	Wine grape	cytosol	32.27	32.13

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100257603	wikigene:100257603	MapMan:22.7.5.1	Gene3D:3.30.450.50	ProteinID:CBI21060
ProteinID:CBI21060.3	UniProt:D7SUW1	EMBL:FN595231	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006887	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	InterPro:IPR001388	InterPro:IPR010908
EntrezGene:LOC100257603	wikigene:LOC100257603	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	PFAM:PF00957	PFAM:PF13774
PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF104
SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	SignalP:SignalP-noTM	InterPro:Synaptobrevin	TIGR:TC68855
TMHMM:TMhelix	UniParc:UPI00015C8571	ArrayExpress:VIT_04s0008g05650	EnsemblPlantsGene:VIT_04s0008g05650	EnsemblPlants:VIT_04s0008g05650.t01	RefSeq:XP_002285207
RefSeq:XP_002285207.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:+:5150505..5155641

Molecular Weight (calculated)

25042.3 Da

IEP (calculated)

9.761

GRAVY (calculated)

-0.083

Length

220 amino acids

Sequence
(BLAST)

001: MTILYALVAR GSLVLAEFSG TSTNASAIAR QILEKIPGDN DSNVSYSQDR YIFHVKRTDG LTVLCMADDT AGRRIPFAFL EDIHQRFVRT YGRAVHSAQA
101: YAMNDDFSRV LSQQMEYYSN DPNADRINRL KGEMGQVRNV MIENIDKVLD RGDRLELLVD KTANMQGNTF RFRKQARRFR STVWWRNVKL TVALIIILLV
201: IVYVILAFAC HGLALPSCVK

Best Arabidopsis Sequence Match ( AT4G32150.1 )
(BLAST)

001: MAILYALVAR GTVVLSEFTA TSTNASTIAK QILEKVPGDN DSNVSYSQDR YVFHVKRTDG LTVLCMAEET AGRRIPFAFL EDIHQRFVRT YGRAVHTALA
101: YAMNEEFSRV LSQQIDYYSN DPNADRINRI KGEMNQVRGV MIENIDKVLD RGERLELLVD KTANMQGNTF RFRKQARRFR SNVWWRNCKL TVLLILLLLV
201: IIYIAVAFLC HGPTLPSCI

Arabidopsis Description

VAMP711Vesicle-associated membrane protein 711 [Source:UniProtKB/Swiss-Prot;Acc:O49377]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.