Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plasma membrane
Predictor Summary:
Predictor Summary:
- peroxisome 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G035380.1 | |
| HORVU6Hr1G041590.1 | |
| HORVU6Hr1G068640.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G32150.1 | HORVU3Hr1G035380.1 | AT5G46860.1 | 24556609 |
| AT4G32150.1 | HORVU6Hr1G041590.1 | AT5G46860.1 | 24556609 |
| AT4G32150.1 | HORVU6Hr1G068640.1 | AT5G46860.1 | 24556609 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G037300.1 | Wheat | plasma membrane, plastid | 88.21 | 98.19 |
| TraesCS7A01G136300.1 | Wheat | plasma membrane, plastid | 88.21 | 98.19 |
| TraesCS7D01G136300.1 | Wheat | endoplasmic reticulum, plasma membrane | 87.8 | 97.74 |
| OQU75937 | Sorghum | plasma membrane | 80.49 | 89.59 |
| Os06t0174400-01 | Rice | plasma membrane | 78.46 | 87.33 |
| Zm00001d037483_P002 | Maize | plasma membrane | 81.3 | 78.74 |
| GSMUA_Achr6P35140_001 | Banana | plasma membrane | 67.89 | 75.91 |
| GSMUA_Achr9P09180_001 | Banana | endoplasmic reticulum, plasma membrane | 67.07 | 75.0 |
| VIT_04s0008g05650.t01 | Wine grape | extracellular | 63.41 | 70.91 |
| Solyc06g065950.2.1 | Tomato | endoplasmic reticulum, nucleus | 63.41 | 70.91 |
| PGSC0003DMT400067225 | Potato | mitochondrion | 63.41 | 70.91 |
| Bra040067.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 63.01 | 70.78 |
| CDY61387 | Canola | endoplasmic reticulum, plasma membrane | 63.01 | 70.78 |
| KRH73537 | Soybean | endoplasmic reticulum | 63.01 | 70.78 |
| CDX75224 | Canola | endoplasmic reticulum, plasma membrane | 63.01 | 70.45 |
| AT4G32150.1 | Thale cress | golgi, plasma membrane | 62.6 | 70.32 |
| KRH14588 | Soybean | endoplasmic reticulum | 62.6 | 70.32 |
| CDX68821 | Canola | endoplasmic reticulum, plasma membrane | 62.6 | 70.0 |
| CDX69781 | Canola | plasma membrane | 61.79 | 68.78 |
| CDX97084 | Canola | plasma membrane | 61.38 | 68.33 |
| Bra008987.1-P | Field mustard | mitochondrion | 60.57 | 67.42 |
| AT2G25340.1 | Thale cress | endoplasmic reticulum, plasma membrane | 58.94 | 66.21 |
| AT5G11150.2 | Thale cress | golgi, plasma membrane | 60.57 | 65.93 |
| KRH03646 | Soybean | plasma membrane | 60.16 | 65.78 |
| KRH20159 | Soybean | plastid | 59.35 | 65.18 |
| HORVU7Hr1G078500.1 | Barley | plasma membrane | 47.97 | 53.15 |
| Bra011325.1-P | Field mustard | endoplasmic reticulum | 57.72 | 38.9 |
| HORVU5Hr1G107510.2 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 31.71 | 34.98 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:22.7.5.1 | Gene3D:3.30.450.50 | UniProt:A0A287VUT8 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | EnsemblPlantsGene:HORVU7Hr1G028250 | EnsemblPlants:HORVU7Hr1G028250.1 |
| InterPro:IPR001388 | InterPro:IPR010908 | InterPro:Longin-like_dom_sf | InterPro:Longin_dom | PFAM:PF00957 | PFAM:PF13774 |
| PRINTS:PR00219 | PFscan:PS50859 | PFscan:PS50892 | PANTHER:PTHR21136 | PANTHER:PTHR21136:SF104 | SMART:SM01270 |
| SUPFAM:SSF58038 | SUPFAM:SSF64356 | InterPro:Synaptobrevin | TMHMM:TMhelix | UniParc:UPI000B46A255 | SEG:seg |
Description
No Description!
Coordinates
chrchr7H:+:51040903..51043976
Molecular Weight (calculated)
27498.2 Da
IEP (calculated)
10.193
GRAVY (calculated)
-0.229
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: RPAPSKEGRK EGRKSRVHTA EARGGMPILY GVVARGATVL AEHSAAATNA GAVARQVLER LPDGGADSHV SYTQDRYVFH AKRTDGITAL CMADDAAGRR
101: IPFAFLEDIH GKFVKTYGRA ALTALAYAMN DEFSRVLSQQ MDYYSNDPSA DQINRMRGEI SQVRSVMIDN IDKVLERGDR LDLLVDKTTT MQGNTVRFKR
201: QARRYRSTTW WRNVKLTAAL ILLLLIVVYI ALFFVCHGFT LPTCIR
101: IPFAFLEDIH GKFVKTYGRA ALTALAYAMN DEFSRVLSQQ MDYYSNDPSA DQINRMRGEI SQVRSVMIDN IDKVLERGDR LDLLVDKTTT MQGNTVRFKR
201: QARRYRSTTW WRNVKLTAAL ILLLLIVVYI ALFFVCHGFT LPTCIR
001: MAIIFALVAR GTVVLSEFSA TSTNASSISK QILEKLPGND SDSHMSYSQD RYIFHVKRTD GLTVLCMADE TAGRNIPFAF LDDIHQRFVK TYGRAIHSAQ
101: AYSMNDEFSR VLSQQMEFYS NDPNADRMSR IKGEMSQVRN VMIENIDKVL DRGERLELLV DKTENMQGNT FRFRKQARRY RTIMWWRNVK LTIALILVLA
201: LVVYIAMAFV CHGPSLPSCF K
101: AYSMNDEFSR VLSQQMEFYS NDPNADRMSR IKGEMSQVRN VMIENIDKVL DRGERLELLV DKTENMQGNT FRFRKQARRY RTIMWWRNVK LTIALILVLA
201: LVVYIAMAFV CHGPSLPSCF K
Arabidopsis Description
ATVAMP713vesicle-associated membrane protein 713 [Source:TAIR;Acc:AT5G11150]
SUBAcon: [plasma membrane,golgi]
SUBAcon: [plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.