Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- peroxisome 1
- plastid 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G136300.1 | Wheat | plasma membrane, plastid | 100.0 | 100.0 |
| TraesCS7D01G136300.1 | Wheat | endoplasmic reticulum, plasma membrane | 99.55 | 99.55 |
| OQU75937 | Sorghum | plasma membrane | 90.5 | 90.5 |
| Os06t0174400-01 | Rice | plasma membrane | 89.14 | 89.14 |
| HORVU7Hr1G028250.1 | Barley | peroxisome, plasma membrane | 98.19 | 88.21 |
| Zm00001d037483_P002 | Maize | plasma membrane | 91.4 | 79.53 |
| GSMUA_Achr6P35140_001 | Banana | plasma membrane | 76.47 | 76.82 |
| GSMUA_Achr9P09180_001 | Banana | endoplasmic reticulum, plasma membrane | 76.47 | 76.82 |
| TraesCS6B01G409400.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 79.19 | 75.11 |
| VIT_04s0008g05650.t01 | Wine grape | extracellular | 72.4 | 72.73 |
| Solyc06g065950.2.1 | Tomato | endoplasmic reticulum, nucleus | 72.4 | 72.73 |
| PGSC0003DMT400067225 | Potato | mitochondrion | 72.4 | 72.73 |
| KRH73537 | Soybean | endoplasmic reticulum | 71.95 | 72.6 |
| CDY61387 | Canola | endoplasmic reticulum, plasma membrane | 71.95 | 72.6 |
| Bra040067.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 71.95 | 72.6 |
| CDX75224 | Canola | endoplasmic reticulum, plasma membrane | 71.95 | 72.27 |
| AT4G32150.1 | Thale cress | golgi, plasma membrane | 71.49 | 72.15 |
| KRH14588 | Soybean | endoplasmic reticulum | 71.49 | 72.15 |
| CDX68821 | Canola | endoplasmic reticulum, plasma membrane | 71.49 | 71.82 |
| CDX69781 | Canola | plasma membrane | 69.68 | 69.68 |
| CDX97084 | Canola | plasma membrane | 69.23 | 69.23 |
| Bra008987.1-P | Field mustard | mitochondrion | 68.33 | 68.33 |
| AT2G25340.1 | Thale cress | endoplasmic reticulum, plasma membrane | 67.42 | 68.04 |
| AT5G11150.2 | Thale cress | golgi, plasma membrane | 67.87 | 66.37 |
| KRH03646 | Soybean | plasma membrane | 66.06 | 64.89 |
| KRH20159 | Soybean | plastid | 65.16 | 64.29 |
| TraesCS7B01G228700.1 | Wheat | plasma membrane | 53.39 | 53.15 |
| Bra011325.1-P | Field mustard | endoplasmic reticulum | 65.16 | 39.45 |
| TraesCS5B01G457700.1 | Wheat | vacuole | 36.2 | 36.04 |
| TraesCS4B01G281700.1 | Wheat | cytosol | 35.75 | 31.1 |
| TraesCS7B01G181100.1 | Wheat | cytosol, plastid | 33.03 | 30.17 |
| TraesCS3B01G193500.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 32.13 | 15.85 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:22.7.5.1 | Gene3D:3.30.450.50 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:IPR001388 | InterPro:IPR010908 | InterPro:Longin-like_dom_sf |
| InterPro:Longin_dom | PFAM:PF00957 | PFAM:PF13774 | PRINTS:PR00219 | PFscan:PS50859 | PFscan:PS50892 |
| PANTHER:PTHR21136 | PANTHER:PTHR21136:SF104 | SMART:SM01270 | SUPFAM:SSF58038 | SUPFAM:SSF64356 | InterPro:Synaptobrevin |
| TMHMM:TMhelix | EnsemblPlantsGene:TraesCS7B01G037300 | EnsemblPlants:TraesCS7B01G037300.1 | TIGR:cd15843 | SEG:seg | : |
Description
No Description!
Coordinates
chr7B:-:36456023..36458432
Molecular Weight (calculated)
24754.0 Da
IEP (calculated)
9.724
GRAVY (calculated)
-0.026
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MPILYAVVAR GATVLAEHSA AATNAGAVAR QVLERLPGGG ADSHVSYTQD RYVFHAKRTD GITALCMADD AAGRRIPFAF LEDIHGKFVK TYGRAALTAL
101: AYAMNDEFSR VLSQQMDYYS NDPSADQINR MRGEISQVRS VMIDNIDKVL ERGDRLDLLV DKTTTMQGNT VRFKRQARRY RSTTWWRNVK LTAALILLLL
201: VIVYIALFFV CHGFTLPTCI R
101: AYAMNDEFSR VLSQQMDYYS NDPSADQINR MRGEISQVRS VMIDNIDKVL ERGDRLDLLV DKTTTMQGNT VRFKRQARRY RSTTWWRNVK LTAALILLLL
201: VIVYIALFFV CHGFTLPTCI R
001: MAIIFALVAR GTVVLSEFSA TSTNASSISK QILEKLPGND SDSHMSYSQD RYIFHVKRTD GLTVLCMADE TAGRNIPFAF LDDIHQRFVK TYGRAIHSAQ
101: AYSMNDEFSR VLSQQMEFYS NDPNADRMSR IKGEMSQVRN VMIENIDKVL DRGERLELLV DKTENMQGNT FRFRKQARRY RTIMWWRNVK LTIALILVLA
201: LVVYIAMAFV CHGPSLPSCF K
101: AYSMNDEFSR VLSQQMEFYS NDPNADRMSR IKGEMSQVRN VMIENIDKVL DRGERLELLV DKTENMQGNT FRFRKQARRY RTIMWWRNVK LTIALILVLA
201: LVVYIAMAFV CHGPSLPSCF K
Arabidopsis Description
ATVAMP713vesicle-associated membrane protein 713 [Source:TAIR;Acc:AT5G11150]
SUBAcon: [plasma membrane,golgi]
SUBAcon: [plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.