Factsheet for GSMUA_Achr6P35140_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 2
nucleus 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P15580_001
GSMUA_Achr4P20770_001
GSMUA_Achr5P04090_001
GSMUA_Achr7P04850_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32150.1	GSMUA_Achr1P15580_001	AT5G46860.1	24556609
AT4G32150.1	GSMUA_Achr4P20770_001	AT5G46860.1	24556609
AT4G32150.1	GSMUA_Achr5P04090_001	AT5G46860.1	24556609
AT4G32150.1	GSMUA_Achr7P04850_001	AT5G46860.1	24556609

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P09180_001	Banana	endoplasmic reticulum, plasma membrane	90.91	90.91
KRH73537	Soybean	endoplasmic reticulum	82.73	83.11
VIT_04s0008g05650.t01	Wine grape	extracellular	82.27	82.27
KRH14588	Soybean	endoplasmic reticulum	81.36	81.74
OQU75937	Sorghum	plasma membrane	80.45	80.09
Bra040067.1-P	Field mustard	endoplasmic reticulum, plasma membrane	79.55	79.91
CDY61387	Canola	endoplasmic reticulum, plasma membrane	79.55	79.91
CDX75224	Canola	endoplasmic reticulum, plasma membrane	79.55	79.55
AT4G32150.1	Thale cress	golgi, plasma membrane	79.09	79.45
CDX68821	Canola	endoplasmic reticulum, plasma membrane	79.09	79.09
Solyc06g065950.2.1	Tomato	endoplasmic reticulum, nucleus	79.09	79.09
PGSC0003DMT400067225	Potato	mitochondrion	79.09	79.09
Os06t0174400-01	Rice	plasma membrane	78.64	78.28
CDX69781	Canola	plasma membrane	76.82	76.47
TraesCS7B01G037300.1	Wheat	plasma membrane, plastid	76.82	76.47
TraesCS7A01G136300.1	Wheat	plasma membrane, plastid	76.82	76.47
AT2G25340.1	Thale cress	endoplasmic reticulum, plasma membrane	75.91	76.26
TraesCS7D01G136300.1	Wheat	endoplasmic reticulum, plasma membrane	76.36	76.02
CDX97084	Canola	plasma membrane	75.45	75.11
Bra008987.1-P	Field mustard	mitochondrion	75.45	75.11
AT5G11150.2	Thale cress	golgi, plasma membrane	74.09	72.12
Os02t0803600-01	Rice	plasma membrane	73.18	71.24
TraesCS6A01G371800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	74.55	70.39
Zm00001d037483_P002	Maize	plasma membrane	80.91	70.08
TraesCS6D01G355800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	74.09	69.96
TraesCS6B01G409400.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	73.64	69.53
EES05972	Sorghum	cytosol	70.91	68.42
HORVU7Hr1G028250.1	Barley	peroxisome, plasma membrane	75.91	67.89
Zm00001d018408_P001	Maize	cytosol	69.55	67.7
KRH20159	Soybean	plastid	68.18	66.96
KRH03646	Soybean	plasma membrane	67.73	66.22
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	55.45	55.96
GSMUA_Achr11P...	Banana	endoplasmic reticulum	55.45	55.96
Bra011325.1-P	Field mustard	endoplasmic reticulum	72.73	43.84
GSMUA_Achr4P22260_001	Banana	cytosol, extracellular	38.64	38.81
GSMUA_Achr6P04490_001	Banana	cytosol, extracellular	38.64	38.64
GSMUA_Achr8P15290_001	Banana	cytosol, endoplasmic reticulum	38.18	38.36
GSMUA_Achr9P25440_001	Banana	cytosol, vacuole	38.18	38.36
GSMUA_Achr7P01760_001	Banana	plasma membrane	37.73	37.9
GSMUA_Achr2P17740_001	Banana	cytosol	37.27	37.44
GSMUA_Achr9P11030_001	Banana	cytosol	36.82	36.99
GSMUA_Achr9P30970_001	Banana	cytosol	32.73	31.58
GSMUA_Achr8P32930_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	33.64	31.09
GSMUA_Achr8P03260_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	30.91	30.91

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.5.1	Gene3D:3.30.450.50	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	EnsemblPlantsGene:GSMUA_Achr6G35140_001	EnsemblPlants:GSMUA_Achr6P35140_001	EnsemblPlants:GSMUA_Achr6T35140_001
InterPro:IPR001388	InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	UniProt:M0TCV7	PFAM:PF00957
PFAM:PF13774	PRINTS:PR00219	PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF104
SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	SignalP:SignalP-noTM	InterPro:Synaptobrevin	TMHMM:TMhelix
UniParc:UPI0002967422	SEG:seg	:	:	:	:

Description

Vesicle-associated membrane protein 713 [Source:GMGC_GENE;Acc:GSMUA_Achr6G35140_001]

Coordinates

chr6:-:33462552..33467999

Molecular Weight (calculated)

25096.5 Da

IEP (calculated)

9.616

GRAVY (calculated)

-0.024

Length

220 amino acids

Sequence
(BLAST)

001: MAILYALVAR GSVVLAEFSG ATTNASAVAR QILERIPGAT DTHVSYSQDR YVFHVKRTDG ITVLCVADDT AGRRIPFAFL EDIHGRFVRT YRHACHTAPA
101: YAMNDEFSRV LSQQMDYYSN DPNADRMNRI KGEMSQVRDV MIENIDKVLE RGDRLELLVD KTTNMQGNTI RFRKQARRFR NTVWWRNVKL TVALILLILI
201: IIYVVLAFVC HGIALPSCIR

Best Arabidopsis Sequence Match ( AT5G11150.1 )
(BLAST)

001: MAIIFALVAR GTVVLSEFSA TSTNASSISK QILEKLPGND SDSHMSYSQD RYIFHVKRTD GLTVLCMADE TAGRNIPFAF LDDIHQRFVK TYGRAIHSAQ
101: AYSMNDEFSR VLSQQMEFYS NDPNADRMSR IKGEMSQVRN VMIENIDKVL DRGERLELLV DKTENMQGNT FRFRKQARRY RTIMWWRNVK LTIALILVLA
201: LVVYIAMAFV CHGPSLPSCF K

Arabidopsis Description

ATVAMP713vesicle-associated membrane protein 713 [Source:TAIR;Acc:AT5G11150]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.