Factsheet for GSMUA_Achr6P04490_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P15290_001	Banana	cytosol, endoplasmic reticulum	86.36	86.76
GSMUA_Achr4P22260_001	Banana	cytosol, extracellular	85.91	86.3
GSMUA_Achr9P11030_001	Banana	cytosol	85.91	86.3
GSMUA_Achr2P17740_001	Banana	cytosol	85.45	85.84
GSMUA_Achr9P25440_001	Banana	cytosol, vacuole	85.0	85.39
GSMUA_Achr7P01760_001	Banana	plasma membrane	84.09	84.47
PGSC0003DMT400076273	Potato	cytosol	82.73	82.35
Solyc09g091610.2.1	Tomato	plastid	82.27	81.9
KRH33448	Soybean	extracellular, golgi	23.18	80.95
KRG90219	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	80.0	79.64
Solyc12g098180.1.1	Tomato	cytosol, vacuole	78.64	78.28
KXG40114	Sorghum	cytosol, vacuole	73.18	73.18
Zm00001d027808_P001	Maize	cytosol, mitochondrion	73.18	72.85
TraesCS4D01G280300.1	Wheat	cytosol	71.82	71.17
Os03t0165800-01	Rice	plasma membrane	71.82	70.85
GSMUA_Achr8P03260_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	67.73	67.73
KRH33450	Soybean	cytosol	52.27	65.34
TraesCS4B01G281700.1	Wheat	cytosol	71.82	62.2
TraesCS4A01G021800.2	Wheat	cytosol	71.82	62.2
GSMUA_Achr9P30970_001	Banana	cytosol	57.73	55.7
GSMUA_Achr8P32930_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	59.55	55.04
Zm00001d048443_P002	Maize	peroxisome	65.0	46.13
GSMUA_Achr6P35140_001	Banana	plasma membrane	38.64	38.64
GSMUA_Achr9P09180_001	Banana	endoplasmic reticulum, plasma membrane	38.18	38.18
GSMUA_Achr11P...	Banana	endoplasmic reticulum	35.91	36.24
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	35.0	35.32

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	ncoils:Coil	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	EnsemblPlantsGene:GSMUA_Achr6G04490_001
EnsemblPlants:GSMUA_Achr6P04490_001	EnsemblPlants:GSMUA_Achr6T04490_001	InterPro:IPR001388	InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom
UniProt:M0T447	PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859
PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF120	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356
InterPro:Synaptobrevin	TMHMM:TMhelix	UniParc:UPI000296C268	SEG:seg	:	:

Description

Putative vesicle-associated membrane protein 726 [Source:GMGC_GENE;Acc:GSMUA_Achr6G04490_001]

Coordinates

chr6:-:3062570..3066784

Molecular Weight (calculated)

25072.6 Da

IEP (calculated)

9.338

GRAVY (calculated)

-0.167

Length

220 amino acids

Sequence
(BLAST)

001: MGQQSLIYSF VARGTVILAE YTEFTGNFTT VASQCLQKLP ATSNKFTYNC DGHTFNYLVQ DGYTYCVVAV ESAGRQIPIA FLERVKEDFN KRYGGGKAST
101: ATAKSLNREF KSKLKEHMKY CVEHPEEINK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRQQG TKMKRKLWIE NMKIKLIVFG
201: IIIALILLIF LSICHGFQCF

Best Arabidopsis Sequence Match ( AT1G04760.2 )
(BLAST)

001: MGQQSLIYSF VARGTVILAE YTEFKGNFTS VAAQCLQKLP SSNNKFTYNC DGHTFNYLAD NGFTYCVVVI ESAGRQIPMA FLERVKEDFN KRYGGGKAST
101: AKANSLNKEF GSKLKEHMQY CADHPEEISK LSKVKAQVTE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTQG TKMKRKLWFE NMKIKLIVFG
201: IIVALILIII LSVCHGFKCT

Arabidopsis Description

VAMP726Putative vesicle-associated membrane protein 726 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAS5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.