Factsheet for TraesCS4D01G280300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G281700.1	Wheat	cytosol	100.0	87.4
TraesCS4A01G021800.2	Wheat	cytosol	100.0	87.4
KXG40114	Sorghum	cytosol, vacuole	85.59	86.36
Zm00001d027808_P001	Maize	cytosol, mitochondrion	85.59	85.97
Os03t0165800-01	Rice	plasma membrane	86.04	85.65
PGSC0003DMT400076273	Potato	cytosol	74.32	74.66
Solyc09g091610.2.1	Tomato	plastid	73.87	74.21
GSMUA_Achr6P04490_001	Banana	cytosol, extracellular	71.17	71.82
Solyc12g098180.1.1	Tomato	cytosol, vacuole	71.17	71.49
KRG90219	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	70.72	71.04
TraesCS5D01G459900.1	Wheat	vacuole	69.82	69.82
KRH33448	Soybean	extracellular, golgi	17.57	61.9
KRH33450	Soybean	cytosol	47.75	60.23
TraesCS5D01G003800.1	Wheat	cytosol	55.86	53.68
Zm00001d048443_P002	Maize	peroxisome	74.32	53.23
TraesCS7D01G278900.1	Wheat	plasma membrane, plastid	54.95	50.41
TraesCS7D01G136300.1	Wheat	endoplasmic reticulum, plasma membrane	35.59	35.75
TraesCS7D01G324800.1	Wheat	plasma membrane	35.14	35.14
TraesCS6D01G355800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	33.33	31.76

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	ncoils:Coil	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:IPR001388
InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219
ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF109	SMART:SM01270
SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS4D01G280300	EnsemblPlants:TraesCS4D01G280300.1
TIGR:cd15843	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:451279420..451281426

Molecular Weight (calculated)

25120.7 Da

IEP (calculated)

9.545

GRAVY (calculated)

-0.335

Length

222 amino acids

Sequence
(BLAST)

001: MGPPPKKLVY SFVGRGTTVL ADHAEASGNF ASVAAQCLQK LPPNNNRLSY NCDGHTFNYH IHDGFTYCVV ATESAGRQLP IGFIERVKED FAKKYSGGKA
101: KTAGPNSLKR EFGPKLKEHM KYCDLHPEEI DKLAKVKAQV SEVKGVMMQN IEKVLDRGEK IELLVDKTED LRSQAQDFKK QGTKIRQKMW WENMKIKLIA
201: FGIIVLLILC IILTVCRDFK CW

Best Arabidopsis Sequence Match ( AT1G04750.1 )
(BLAST)

001: MAQQSLIYSF VARGTVILVE FTDFKGNFTS IAAQCLQKLP SSNNKFTYNC DGHTFNYLVE DGFTYCVVAV DSAGRQIPMS FLERVKEDFN KRYGGGKAAT
101: AQANSLNKEF GSKLKEHMQY CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTTG TQMRRKMWLQ NMKIKLIVLA
201: IIIALILIIV LSVCHGFKC

Arabidopsis Description

VAMP721Putative vesicle-associated membrane protein, synaptobrevin 7B [Source:UniProtKB/TrEMBL;Acc:Q681L9]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.