Skip to main content
crop-pal logo
Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: vacuole, cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 2
  • cytosol 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 2
  • plasma membrane 1
  • golgi 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d027808_P001 Maize cytosol, mitochondrion 93.18 92.76
Os03t0165800-01 Rice plasma membrane 88.64 87.44
TraesCS4D01G280300.1 Wheat cytosol 86.36 85.59
TraesCS4B01G281700.1 Wheat cytosol 86.36 74.8
TraesCS4A01G021800.2 Wheat cytosol 86.36 74.8
PGSC0003DMT400076273 Potato cytosol 73.64 73.3
GSMUA_Achr6P04490_001 Banana cytosol, extracellular 73.18 73.18
KRG90219 Soybean cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 73.18 72.85
Solyc09g091610.2.1 Tomato plastid 73.18 72.85
EER96027 Sorghum extracellular 73.18 72.52
OQU90815 Sorghum cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 70.45 70.45
Solyc12g098180.1.1 Tomato cytosol, vacuole 69.09 68.78
KRH33448 Soybean extracellular, golgi 18.64 65.08
KRH33450 Soybean cytosol 49.55 61.93
Zm00001d048443_P002 Maize peroxisome 78.18 55.48
KXG24150 Sorghum cytosol 57.27 55.02
KXG25383 Sorghum plastid 56.82 51.87
KXG34786 Sorghum cytosol 53.64 47.39
EES09956 Sorghum cytosol, mitochondrion, nucleus, plastid 17.27 45.78
EES13179 Sorghum endoplasmic reticulum, plasma membrane 35.45 35.14
EES05972 Sorghum cytosol 36.36 35.09
OQU75937 Sorghum plasma membrane 35.0 34.84
Protein Annotations
Gene3D:1.20.5.110MapMan:13.4.2.3.4MapMan:22.7.5.1Gene3D:3.30.450.50UniProt:A0A1B6QQB8ncoils:Coil
GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0016192
InterPro:IPR001388InterPro:IPR010908EnsemblPlants:KXG40114ProteinID:KXG40114ProteinID:KXG40114.1InterPro:Longin-like_dom_sf
InterPro:Longin_domPFAM:PF00957PFAM:PF13774PRINTS:PR00219ScanProsite:PS00417PFscan:PS50859
PFscan:PS50892PANTHER:PTHR21136PANTHER:PTHR21136:SF109SMART:SM01270EnsemblPlantsGene:SORBI_3001G493600SUPFAM:SSF58038
SUPFAM:SSF64356InterPro:SynaptobrevinTMHMM:TMhelixUniParc:UPI00081AE879SEG:seg:
Description
hypothetical protein
Coordinates
chr1:-:76260059..76262323
Molecular Weight (calculated)
25028.5 Da
IEP (calculated)
9.359
GRAVY (calculated)
-0.345
Length
220 amino acids
Sequence
(BLAST)
001: MGKQSTLVYS FVARGTVVLA DHAEVSGNFA SVAAQCLQKL PTNNNRFNYN CDGHTFNYHI HDGFTYCVVA TESAGRQLPI GFIERVKEDF FKKYGGGKGK
101: TANANGLKRE YGPKLKEHMR YCDQHPEEID KLAKVKAQVT EVKGVMMQNI EKVLDRGEKI ELLVDKTEDL RSQAQDFRKQ GTKIRQKMWW ENMKMKLIVF
201: GIVVALILLI VLTICKDFNC
Best Arabidopsis Sequence Match ( AT1G04760.2 )
(BLAST)
001: MGQQSLIYSF VARGTVILAE YTEFKGNFTS VAAQCLQKLP SSNNKFTYNC DGHTFNYLAD NGFTYCVVVI ESAGRQIPMA FLERVKEDFN KRYGGGKAST
101: AKANSLNKEF GSKLKEHMQY CADHPEEISK LSKVKAQVTE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTQG TKMKRKLWFE NMKIKLIVFG
201: IIVALILIII LSVCHGFKCT
Arabidopsis Description
VAMP726Putative vesicle-associated membrane protein 726 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAS5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.