Factsheet for Zm00001d027808_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG40114	Sorghum	cytosol, vacuole	92.76	93.18
Os03t0165800-01	Rice	plasma membrane	89.59	88.79
TraesCS4D01G280300.1	Wheat	cytosol	85.97	85.59
PGSC0003DMT400076273	Potato	cytosol	75.57	75.57
Solyc09g091610.2.1	Tomato	plastid	75.11	75.11
TraesCS4A01G021800.2	Wheat	cytosol	85.97	74.8
TraesCS4B01G281700.1	Wheat	cytosol	85.97	74.8
KRG90219	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	73.3	73.3
GSMUA_Achr6P04490_001	Banana	cytosol, extracellular	72.85	73.18
Zm00001d007767_P001	Maize	extracellular	73.3	72.97
Solyc12g098180.1.1	Tomato	cytosol, vacuole	71.95	71.95
KRH33448	Soybean	extracellular, golgi	19.0	66.67
Zm00001d019091_P002	Maize	vacuole	73.76	62.45
KRH33450	Soybean	cytosol	48.87	61.36
Zm00001d013055_P002	Maize	extracellular, plasma membrane	63.8	59.75
Zm00001d048443_P002	Maize	peroxisome	80.09	57.1
Zm00001d053132_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane	33.48	55.22
Zm00001d031942_P003	Maize	plastid	55.66	51.04
Zm00001d005468_P001	Maize	cytosol	54.3	47.43
Zm00001d019298_P002	Maize	cytosol	52.49	45.85
Zm00001d034505_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	58.37	45.26
Zm00001d052756_P001	Maize	endoplasmic reticulum	32.58	37.31
Zm00001d018408_P001	Maize	cytosol	34.84	34.07
Zm00001d037483_P002	Maize	plasma membrane	34.84	30.32

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	UniProt:A0A1D6JPX1	ncoils:Coil
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192
InterPro:IPR001388	InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	ProteinID:ONL94040.1	PFAM:PF00957
PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136
PANTHER:PTHR21136:SF109	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin	TMHMM:TMhelix
UniParc:UPI0002217D9D	EnsemblPlantsGene:Zm00001d027808	EnsemblPlants:Zm00001d027808_P001	EnsemblPlants:Zm00001d027808_T001	SEG:seg	:

Description

vesicle-associated membrane protein 728

Coordinates

chr1:+:14081196..14083562

Molecular Weight (calculated)

25194.6 Da

IEP (calculated)

9.177

GRAVY (calculated)

-0.348

Length

221 amino acids

Sequence
(BLAST)

001: MGQQRTLVYS FVARGTIVLA DHAEVSGNFA SVAAQCLQKL PANNNRFNYN CDGHTFNYHI HDGFTYCVVA TESAGRQLPV GFIERVKDDF SKKYSGGKAK
101: TANANGLKRE YGPKLKEHMK YCDQHPEEID KLAKVKAQVT EVKGVMMQNI EKVLDRGEKI ELLVDKTEDL RAQAQDFRQQ GTKIRRKMWW ENMKMKLIVF
201: GIVVALILLI VLTVCKDFDC W

Best Arabidopsis Sequence Match ( AT1G04760.2 )
(BLAST)

001: MGQQSLIYSF VARGTVILAE YTEFKGNFTS VAAQCLQKLP SSNNKFTYNC DGHTFNYLAD NGFTYCVVVI ESAGRQIPMA FLERVKEDFN KRYGGGKAST
101: AKANSLNKEF GSKLKEHMQY CADHPEEISK LSKVKAQVTE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTQG TKMKRKLWFE NMKIKLIVFG
201: IIVALILIII LSVCHGFKCT

Arabidopsis Description

VAMP726Putative vesicle-associated membrane protein 726 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAS5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.