Factsheet for Zm00001d031942_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG25383	Sorghum	plastid	98.76	98.76
TraesCS7D01G278900.1	Wheat	plasma membrane, plastid	94.19	93.8
TraesCS7A01G279100.1	Wheat	cytosol, plastid	94.19	93.8
TraesCS7B01G181100.1	Wheat	cytosol, plastid	93.78	93.39
Os08t0558600-01	Rice	extracellular	89.21	89.21
GSMUA_Achr8P32930_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	78.42	79.41
VIT_13s0101g00410.t01	Wine grape	endoplasmic reticulum, golgi	75.93	76.57
KRH36005	Soybean	endoplasmic reticulum	75.1	76.05
PGSC0003DMT400061574	Potato	endoplasmic reticulum, mitochondrion, plasma membrane	74.27	74.58
CDX76153	Canola	cytosol	74.69	74.38
CDX67594	Canola	cytosol	73.86	73.86
CDY07551	Canola	cytosol	73.44	73.75
Solyc11g006780.1.1	Tomato	cytosol, mitochondrion, plasma membrane	73.44	73.75
Bra014823.1-P	Field mustard	golgi	73.86	73.55
Bra003177.1-P	Field mustard	cytosol	73.44	73.44
Bra007063.1-P	Field mustard	cytosol, plasma membrane	73.03	73.33
AT3G54300.3	Thale cress	cytosol	73.03	73.33
CDX78228	Canola	cytosol, plasma membrane	72.61	72.92
CDX73490	Canola	plasma membrane	71.78	71.78
CDY13199	Canola	plasma membrane	54.77	66.33
EES09956	Sorghum	cytosol, mitochondrion, nucleus, plastid	21.99	63.86
KRG90750	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	65.98	62.85
Zm00001d007767_P001	Maize	extracellular	57.26	62.16
Zm00001d027808_P001	Maize	cytosol, mitochondrion	51.04	55.66
Zm00001d019091_P002	Maize	vacuole	57.68	53.26
Zm00001d013055_P002	Maize	extracellular, plasma membrane	50.62	51.69
Zm00001d053132_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane	26.14	47.01
Zm00001d005468_P001	Maize	cytosol	46.06	43.87
Zm00001d019298_P002	Maize	cytosol	43.57	41.5
Zm00001d034505_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	46.47	39.3
Zm00001d052756_P001	Maize	endoplasmic reticulum	29.88	37.31
Zm00001d048443_P002	Maize	peroxisome	47.3	36.77
Zm00001d018408_P001	Maize	cytosol	32.78	34.96
Zm00001d037483_P002	Maize	plasma membrane	31.54	29.92

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100216858	MapMan:22.7.5.1	Gene3D:3.30.450.50	UniProt:B4FK20	EMBL:BT037458
EMBL:BT041910	EMBL:EU961304	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0006623	GO:GO:0006810	GO:GO:0007033	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	GO:GO:0033263
InterPro:IPR001388	InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	ProteinID:ONM04033.1	ProteinID:ONM04034.1
ProteinID:ONM04035.1	ProteinID:ONM04036.1	PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417
PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF169	SMART:SM01270	SUPFAM:SSF58038
SUPFAM:SSF64356	InterPro:Synaptobrevin	TMHMM:TMhelix	UniParc:UPI00017B6F57	EnsemblPlantsGene:Zm00001d031942	EnsemblPlants:Zm00001d031942_P003
EnsemblPlants:Zm00001d031942_T003	SEG:seg	:	:	:	:

Description

Vesicle-associated membrane protein 727

Coordinates

chr1:+:207636696..207639711

Molecular Weight (calculated)

27475.1 Da

IEP (calculated)

6.942

GRAVY (calculated)

-0.209

Length

241 amino acids

Sequence
(BLAST)

001: MNSSKQALIY SFVAKGSVVL AEHTAFSGNF STVAVQCLQK LPPNSTRSTY SCDGHTFNFL VNRGFVFLVV ADEAAGRSVP FVFLERVRED FMQRYGSSID
101: EEGQHPLADD ADEDDFLFED RFSIAYNLDR EFGPRLKDHM QYCVNHPEEI NKLSKVKAHL SDVKGIMMDN IEKILDRGEK IELLVGKTET LQSQADSFHR
201: HGRELRRKMW LQNLRFKLMV GGGIAALILI IWLMVCRGFK C

Best Arabidopsis Sequence Match ( AT3G54300.1 )
(BLAST)

001: MSQKGLIYSF VAKGTVVLAE HTPYSGNFST IAVQCLQKLP TNSSKYTYSC DGHTFNFLVD NGFVFLVVAD ESTGRSVPFV FLERVKEDFK KRYEASIKND
101: ERHPLADEDE DDDLFGDRFS VAYNLDREFG PILKEHMQYC MSHPEEMSKL SKLKAQITEV KGIMMDNIEK VLDRGEKIEL LVDKTENLQF QADSFQRQGR
201: QLRRKMWLQS LQMKLMVAGA VFSFILIVWV VACGGFKCSS

Arabidopsis Description

VAMP727Vesicle-associated membrane protein 727 [Source:UniProtKB/Swiss-Prot;Acc:Q9M376]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.