CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 3
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36005	Soybean	endoplasmic reticulum	77.47	82.35
VIT_13s0101g00410.t01	Wine grape	endoplasmic reticulum, golgi	72.33	76.57
CDX67594	Canola	cytosol	72.73	76.35
AT3G54300.3	Thale cress	cytosol	72.33	76.25
Bra014823.1-P	Field mustard	golgi	72.73	76.03
Bra003177.1-P	Field mustard	cytosol	72.33	75.93
CDY07551	Canola	cytosol	71.94	75.83
Solyc11g006780.1.1	Tomato	cytosol, mitochondrion, plasma membrane	71.94	75.83
CDX76153	Canola	cytosol	72.33	75.62
PGSC0003DMT400061574	Potato	endoplasmic reticulum, mitochondrion, plasma membrane	71.54	75.42
CDX78228	Canola	cytosol, plasma membrane	70.75	74.58
Bra007063.1-P	Field mustard	cytosol, plasma membrane	70.75	74.58
CDX73490	Canola	plasma membrane	70.75	74.27
GSMUA_Achr8P32930_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	68.38	72.69
Os08t0558600-01	Rice	extracellular	63.64	66.81
KXG25383	Sorghum	plastid	63.64	66.81
TraesCS7D01G278900.1	Wheat	plasma membrane, plastid	63.64	66.53
TraesCS7A01G279100.1	Wheat	cytosol, plastid	63.64	66.53
Zm00001d031942_P003	Maize	plastid	62.85	65.98
CDY13199	Canola	plasma membrane	51.78	65.83
TraesCS7B01G181100.1	Wheat	cytosol, plastid	62.85	65.7
KRH33448	Soybean	extracellular, golgi	15.81	63.49
KRG99810	Soybean	endoplasmic reticulum	48.62	55.66
KRH46773	Soybean	endoplasmic reticulum	48.62	55.66
KRG89410	Soybean	cytosol	49.01	55.11
KRH50475	Soybean	endoplasmic reticulum	48.22	54.22
KRG90219	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	46.25	52.94
KRH36720	Soybean	endoplasmic reticulum	46.25	52.94
KRH11727	Soybean	cytosol	45.85	52.49
KRH50864	Soybean	cytosol	41.9	47.96
KRH12042	Soybean	cytosol	41.9	47.96
KRH37118	Soybean	cytosol	41.9	47.53
KRH02246	Soybean	cytosol	41.11	47.06
KRG99807	Soybean	cytosol	39.13	44.8
KRH33450	Soybean	cytosol	29.25	42.05
KRH57708	Soybean	plastid	15.81	33.9
EES09956	Sorghum	cytosol, mitochondrion, nucleus, plastid	11.07	33.73
KRH73537	Soybean	endoplasmic reticulum	27.67	31.96
KRH14588	Soybean	endoplasmic reticulum	27.67	31.96
KRH30399	Soybean	endoplasmic reticulum	27.67	31.82
KRH25265	Soybean	plasma membrane	27.67	31.82
KRH20159	Soybean	plastid	26.88	30.36
KRH03646	Soybean	plasma membrane	26.09	29.33

Protein Annotations

EntrezGene:100806307	MapMan:22.7.5.1	Gene3D:3.30.450.50	EMBL:ACUP02012636	EnsemblPlantsGene:GLYMA_20G111100	GO:GO:0000149
GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006887	GO:GO:0006906	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201
UniProt:I1NFE1	InterPro:IPR001388	InterPro:IPR010908	EnsemblPlants:KRG90750	ProteinID:KRG90750	ProteinID:KRG90750.1
InterPro:Longin-like_dom_sf	InterPro:Longin_dom	PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417
PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF169	SMART:SM01270	SUPFAM:SSF58038
SUPFAM:SSF64356	InterPro:Synaptobrevin	UniParc:UPI00023DC771	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr20:+:35319189..35323116

Molecular Weight (calculated)

28934.9 Da

IEP (calculated)

5.963

GRAVY (calculated)

-0.091

Length

253 amino acids

Sequence
(BLAST)

001: MSQRGLIYSF VAKGTVVLAE HTQYTGNFST IAVQCLQKLP SNSSKYTYSC DGHTFNFLLD TGFVFLVVAD ESAGRSVPFV FLERVKDDFM KRYGASIKNE
101: GAHPLADDDD DDDLFEDRFS IAYNLDREFG PALKEHMQYC MNHPEEMSKL SKLKAQITEV KGIMMDNIEK VLDRGEKIEL LVDKTENLQF QVCIIIIILI
201: KHLYLSFLNK SFVYPKETLV FESTWPNSPV ILLMLLYFPF KFRLTASRGR AGS

Best Arabidopsis Sequence Match ( AT3G54300.1 )
(BLAST)

001: MSQKGLIYSF VAKGTVVLAE HTPYSGNFST IAVQCLQKLP TNSSKYTYSC DGHTFNFLVD NGFVFLVVAD ESTGRSVPFV FLERVKEDFK KRYEASIKND
101: ERHPLADEDE DDDLFGDRFS VAYNLDREFG PILKEHMQYC MSHPEEMSKL SKLKAQITEV KGIMMDNIEK VLDRGEKIEL LVDKTENLQF QADSFQRQGR
201: QLRRKMWLQS LQMKLMVAGA VFSFILIVWV VACGGFKCSS

Arabidopsis Description

VAMP727Vesicle-associated membrane protein 727 [Source:UniProtKB/Swiss-Prot;Acc:Q9M376]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.