CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
cytosol 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46773	Soybean	endoplasmic reticulum	98.64	98.64
KRH36720	Soybean	endoplasmic reticulum	84.16	84.16
KRH33448	Soybean	extracellular, golgi	23.98	84.13
KRH11727	Soybean	cytosol	83.71	83.71
KRG89410	Soybean	cytosol	84.16	82.67
KRH50475	Soybean	endoplasmic reticulum	83.71	82.22
KRG90219	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	81.9	81.9
KRH12042	Soybean	cytosol	71.04	71.04
KRH50864	Soybean	cytosol	70.14	70.14
KRH37118	Soybean	cytosol	70.59	69.96
KRH02246	Soybean	cytosol	69.23	69.23
KRH33450	Soybean	cytosol	53.85	67.61
KRG99807	Soybean	cytosol	60.18	60.18
KRH36005	Soybean	endoplasmic reticulum	63.8	59.24
KRG90750	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	55.66	48.62
KRH57708	Soybean	plastid	25.34	47.46
KRH73537	Soybean	endoplasmic reticulum	38.46	38.81
KRH14588	Soybean	endoplasmic reticulum	38.46	38.81
KRH25265	Soybean	plasma membrane	37.56	37.73
KRH30399	Soybean	endoplasmic reticulum	37.1	37.27
KRH03646	Soybean	plasma membrane	33.48	32.89
KRH20159	Soybean	plastid	32.13	31.7

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100804314	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	EMBL:ACUP02011312
EMBL:BT099483	UniProt:C6TNZ7	ncoils:Coil	EnsemblPlantsGene:GLYMA_18G172300	GO:GO:0000149	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006887	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	InterPro:IPR001388
InterPro:IPR010908	EnsemblPlants:KRG99810	ProteinID:KRG99810	ProteinID:KRG99810.1	InterPro:Longin-like_dom_sf	InterPro:Longin_dom
PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892
PANTHER:PTHR21136	PANTHER:PTHR21136:SF92	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin
TMHMM:TMhelix	UniParc:UPI0001B17175	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:40857920..40861426

Molecular Weight (calculated)

24790.3 Da

IEP (calculated)

8.981

GRAVY (calculated)

-0.097

Length

221 amino acids

Sequence
(BLAST)

001: MGQQSLIYSF VARGTVILAE YTEFTGNFTS VAAQCLQKLP SSNNKFTYNC DGHTFNYLVD NGFTYCVVAV ESAGRQIPIA FLERIKEDFT KKYAGGKAAT
101: AAAHSLNREF GPKLKEEMQY CVDHPEEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRQQG TKIRRKMWFQ NMKIKLIVLG
201: IIIALILIIV LSVCGGFNCG K

Best Arabidopsis Sequence Match ( AT2G33120.1 )
(BLAST)

001: MAQQSLIYSF VARGTVILVE FTDFKGNFTS IAAQCLQKLP SSNNKFTYNC DGHTFNYLVE NGFTYCVVAV DSAGRQIPMA FLERVKEDFN KRYGGGKAAT
101: AQANSLNKEF GSKLKEHMQY CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTQG TQMRRKMWFQ NMKIKLIVLA
201: IIIALILIII LSICGGFNCG K

Arabidopsis Description

SAR1AT2G33120 protein [Source:UniProtKB/TrEMBL;Acc:B9DH97]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.