Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 3
- nucleus 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH03646 | Soybean | plasma membrane | 95.54 | 95.11 |
| VIT_04s0008g05650.t01 | Wine grape | extracellular | 69.2 | 70.45 |
| PGSC0003DMT400067225 | Potato | mitochondrion | 67.41 | 68.64 |
| Solyc06g065950.2.1 | Tomato | endoplasmic reticulum, nucleus | 67.41 | 68.64 |
| CDX69781 | Canola | plasma membrane | 67.41 | 68.33 |
| CDX97084 | Canola | plasma membrane | 67.41 | 68.33 |
| GSMUA_Achr6P35140_001 | Banana | plasma membrane | 66.96 | 68.18 |
| KRH73537 | Soybean | endoplasmic reticulum | 66.52 | 68.04 |
| CDX68821 | Canola | endoplasmic reticulum, plasma membrane | 66.07 | 67.27 |
| CDX75224 | Canola | endoplasmic reticulum, plasma membrane | 66.07 | 67.27 |
| KRH14588 | Soybean | endoplasmic reticulum | 65.62 | 67.12 |
| Bra008987.1-P | Field mustard | mitochondrion | 66.07 | 66.97 |
| AT4G32150.1 | Thale cress | golgi, plasma membrane | 65.18 | 66.67 |
| Bra040067.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 65.18 | 66.67 |
| CDY61387 | Canola | endoplasmic reticulum, plasma membrane | 65.18 | 66.67 |
| GSMUA_Achr9P09180_001 | Banana | endoplasmic reticulum, plasma membrane | 65.18 | 66.36 |
| AT2G25340.1 | Thale cress | endoplasmic reticulum, plasma membrane | 64.73 | 66.21 |
| TraesCS7B01G037300.1 | Wheat | plasma membrane, plastid | 64.29 | 65.16 |
| TraesCS7A01G136300.1 | Wheat | plasma membrane, plastid | 64.29 | 65.16 |
| TraesCS7D01G136300.1 | Wheat | endoplasmic reticulum, plasma membrane | 63.84 | 64.71 |
| AT5G11150.2 | Thale cress | golgi, plasma membrane | 65.18 | 64.6 |
| Os06t0174400-01 | Rice | plasma membrane | 63.39 | 64.25 |
| OQU75937 | Sorghum | plasma membrane | 63.39 | 64.25 |
| Os02t0803600-01 | Rice | plasma membrane | 63.84 | 63.27 |
| Zm00001d018408_P001 | Maize | cytosol | 62.05 | 61.5 |
| EES05972 | Sorghum | cytosol | 62.5 | 61.4 |
| TraesCS6A01G371800.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 62.95 | 60.52 |
| TraesCS6D01G355800.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 62.5 | 60.09 |
| TraesCS6B01G409400.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 62.05 | 59.66 |
| HORVU7Hr1G028250.1 | Barley | peroxisome, plasma membrane | 65.18 | 59.35 |
| Zm00001d037483_P002 | Maize | plasma membrane | 63.39 | 55.91 |
| KRH30399 | Soybean | endoplasmic reticulum | 51.34 | 52.27 |
| KRH25265 | Soybean | plasma membrane | 50.89 | 51.82 |
| Bra011325.1-P | Field mustard | endoplasmic reticulum | 63.84 | 39.18 |
| KRG90219 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 32.59 | 33.03 |
| KRH46773 | Soybean | endoplasmic reticulum | 32.14 | 32.58 |
| KRG99810 | Soybean | endoplasmic reticulum | 31.7 | 32.13 |
| KRH36720 | Soybean | endoplasmic reticulum | 31.25 | 31.67 |
| KRH11727 | Soybean | cytosol | 30.8 | 31.22 |
| KRH36005 | Soybean | endoplasmic reticulum | 32.59 | 30.67 |
| KRH33448 | Soybean | extracellular, golgi | 8.48 | 30.16 |
| KRH02246 | Soybean | cytosol | 29.02 | 29.41 |
| KRH37118 | Soybean | cytosol | 29.02 | 29.15 |
| KRH50864 | Soybean | cytosol | 28.57 | 28.96 |
| KRG89410 | Soybean | cytosol | 29.02 | 28.89 |
| KRH50475 | Soybean | endoplasmic reticulum | 29.02 | 28.89 |
| KRH12042 | Soybean | cytosol | 28.12 | 28.51 |
| KRH33450 | Soybean | cytosol | 21.43 | 27.27 |
| KRG90750 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 30.36 | 26.88 |
| KRG99807 | Soybean | cytosol | 26.34 | 26.7 |
| KRH57708 | Soybean | plastid | 9.82 | 18.64 |
Protein Annotations
| Gene3D:1.20.5.110 | EntrezGene:100814718 | MapMan:22.7.5.1 | Gene3D:3.30.450.50 | EMBL:ACUP02008244 | EnsemblPlantsGene:GLYMA_13G160500 |
| GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006887 | GO:GO:0006906 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 |
| GO:GO:0031201 | UniProt:I1LZR3 | InterPro:IPR001388 | InterPro:IPR010908 | EnsemblPlants:KRH20159 | ProteinID:KRH20159 |
| ProteinID:KRH20159.1 | InterPro:Longin-like_dom_sf | InterPro:Longin_dom | PFAM:PF00957 | PFAM:PF13774 | PRINTS:PR00219 |
| ScanProsite:PS00417 | PFscan:PS50859 | PFscan:PS50892 | PANTHER:PTHR21136 | PANTHER:PTHR21136:SF104 | SMART:SM01270 |
| SUPFAM:SSF58038 | SUPFAM:SSF64356 | InterPro:Synaptobrevin | TMHMM:TMhelix | UniParc:UPI000233B394 | SEG:seg |
Description
hypothetical protein
Coordinates
chr13:+:27619941..27624709
Molecular Weight (calculated)
25510.9 Da
IEP (calculated)
9.872
GRAVY (calculated)
-0.070
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MGILYGMVAR GQVVLAEFSA TQSNASVVAK QILSKINQGS DNNNDSNVSF SHDRYVFHVK RTDGLTVLCM ADDAFGRIAP FAFLEDIHKK FVKTYARAIL
101: SAPAYAMNDE FSRVLNQQME YYSNDPNADR LNRLKGEMTQ VRTVMIDNID KVLERGGRLE LLVEKTSAMN SNSIRFKRQS RRYKNNLWWS NVRLTVALVI
201: IFVIVVYIIL AFICHGPLLS SCWR
101: SAPAYAMNDE FSRVLNQQME YYSNDPNADR LNRLKGEMTQ VRTVMIDNID KVLERGGRLE LLVEKTSAMN SNSIRFKRQS RRYKNNLWWS NVRLTVALVI
201: IFVIVVYIIL AFICHGPLLS SCWR
001: MAIIFALVAR GTVVLSEFSA TSTNASSISK QILEKLPGND SDSHMSYSQD RYIFHVKRTD GLTVLCMADE TAGRNIPFAF LDDIHQRFVK TYGRAIHSAQ
101: AYSMNDEFSR VLSQQMEFYS NDPNADRMSR IKGEMSQVRN VMIENIDKVL DRGERLELLV DKTENMQGNT FRFRKQARRY RTIMWWRNVK LTIALILVLA
201: LVVYIAMAFV CHGPSLPSCF K
101: AYSMNDEFSR VLSQQMEFYS NDPNADRMSR IKGEMSQVRN VMIENIDKVL DRGERLELLV DKTENMQGNT FRFRKQARRY RTIMWWRNVK LTIALILVLA
201: LVVYIAMAFV CHGPSLPSCF K
Arabidopsis Description
ATVAMP713vesicle-associated membrane protein 713 [Source:TAIR;Acc:AT5G11150]
SUBAcon: [plasma membrane,golgi]
SUBAcon: [plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.