Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| endoplasmic reticulum:
27224218
endoplasmic reticulum: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH07476 | Soybean | cytosol | 98.9 | 98.9 |
| KRH74378 | Soybean | cytosol | 93.41 | 93.41 |
| KRH39570 | Soybean | cytosol | 91.58 | 91.58 |
| Solyc08g076540.2.1 | Tomato | nucleus | 90.84 | 90.84 |
| PGSC0003DMT400038357 | Potato | cytosol | 90.11 | 90.11 |
| VIT_02s0012g01850.t01 | Wine grape | cytosol | 89.01 | 88.69 |
| Solyc06g062360.2.1 | Tomato | cytosol | 88.28 | 88.28 |
| Solyc08g005200.2.1 | Tomato | cytosol | 87.91 | 87.91 |
| PGSC0003DMT400043211 | Potato | cytosol | 87.91 | 87.91 |
| Solyc11g066910.1.1 | Tomato | plastid | 85.71 | 85.71 |
| PGSC0003DMT400084469 | Potato | cytosol, golgi, mitochondrion, nucleus | 19.41 | 84.13 |
| AT5G46860.1 | Thale cress | cytosol | 79.49 | 80.97 |
| Bra024989.1-P | Field mustard | cytosol | 78.75 | 79.63 |
| CDY33485 | Canola | cytosol | 78.75 | 79.63 |
| CDX77702 | Canola | cytosol | 78.75 | 79.34 |
| CDY01290 | Canola | cytosol | 77.66 | 78.81 |
| CDY37158 | Canola | cytosol | 76.92 | 78.65 |
| Bra022073.1-P | Field mustard | cytosol | 76.92 | 78.65 |
| Bra023256.1-P | Field mustard | cytosol | 75.46 | 78.33 |
| CDY43620 | Canola | cytosol | 76.56 | 78.28 |
| GSMUA_Achr7P04850_001 | Banana | cytosol | 78.02 | 78.02 |
| CDX78796 | Canola | cytosol | 78.02 | 77.17 |
| Bra040178.1-P | Field mustard | cytosol | 78.02 | 77.17 |
| CDX93845 | Canola | cytosol | 73.99 | 76.81 |
| GSMUA_Achr5P04090_001 | Banana | cytosol | 78.39 | 76.7 |
| GSMUA_Achr4P20770_001 | Banana | cytosol | 74.73 | 74.73 |
| CDY01478 | Canola | cytosol | 75.46 | 74.37 |
| CDY60786 | Canola | cytosol | 73.99 | 73.99 |
| EES02705 | Sorghum | cytosol | 75.46 | 73.57 |
| Os01t0254900-01 | Rice | plasma membrane | 75.46 | 73.57 |
| HORVU3Hr1G035380.1 | Barley | cytosol | 73.26 | 72.2 |
| TraesCS3A01G175000.1 | Wheat | cytosol | 73.26 | 72.2 |
| GSMUA_Achr1P15580_001 | Banana | cytosol | 72.16 | 72.16 |
| AT4G17730.2 | Thale cress | cytosol | 69.23 | 72.14 |
| TraesCS3D01G180500.1 | Wheat | cytosol | 72.89 | 71.84 |
| PGSC0003DMT400068230 | Potato | cytosol | 79.49 | 71.62 |
| CDX90452 | Canola | cytosol | 72.89 | 71.58 |
| Bra012645.1-P | Field mustard | cytosol | 72.89 | 71.58 |
| PGSC0003DMT400045973 | Potato | cytosol | 30.04 | 61.19 |
| Os02t0702800-01 | Rice | cytosol | 58.97 | 60.3 |
| Zm00001d040286_P003 | Maize | cytosol | 65.93 | 60.2 |
| KRH06786 | Soybean | plastid | 58.24 | 60.0 |
| HORVU6Hr1G068640.1 | Barley | cytosol | 56.04 | 57.52 |
| HORVU6Hr1G041590.1 | Barley | cytosol | 56.04 | 57.52 |
| Zm00001d017756_P001 | Maize | extracellular | 51.65 | 56.85 |
| EES05663 | Sorghum | cytosol | 54.95 | 55.97 |
| TraesCS6A01G271000.1 | Wheat | cytosol | 52.75 | 53.53 |
| TraesCS6D01G244100.2 | Wheat | cytosol | 57.14 | 53.42 |
| TraesCS6B01G298100.3 | Wheat | cytosol | 53.11 | 52.35 |
| KRG94743 | Soybean | plastid | 35.9 | 51.31 |
| Zm00001d008333_P003 | Maize | cytosol | 56.04 | 47.08 |
| Zm00001d039536_P001 | Maize | cytosol | 42.12 | 43.73 |
| AT1G32270.1 | Thale cress | nucleus | 50.92 | 33.41 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.2 | EntrezGene:547656 | EMBL:ACUP02009947 | EMBL:BT094419 |
| UniProt:C6TA84 | EnsemblPlantsGene:GLYMA_16G075400 | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0006906 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0012505 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0031201 | GO:GO:0048278 | InterPro:IPR000727 |
| EnsemblPlants:KRH07229 | ProteinID:KRH07229 | ProteinID:KRH07229.1 | PFAM:PF05739 | PFAM:PF14523 | ScanProsite:PS00914 |
| PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF138 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE |
| SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0001B15FF2 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr16:-:7599961..7606068
Molecular Weight (calculated)
29985.8 Da
IEP (calculated)
6.261
GRAVY (calculated)
-0.215
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFQDIEAGR PFSSRRGLMN GKQDPTQAVA AGIFQINTAV STFQRLVNTL GTPKDTPDLR EKLHKTRLHI GQLVKDTSAK LKQASDIDHH AEVNASKKIA
101: DAKLAKDFQA VLKEFQKAQR LAAERETAYT PFVPQAVLPS SYTASEVDVG SDKSPEQRAL LVESRRQEVL FLDNEIAFNE AIIEEREQGI QEIQQQIGEV
201: NEIFKDLAVL VHEQGAMIDD IGSNIENSHA ATAQAKSQLA KASKTQRSNS SLTCLLLVIF GIVLLIVIIV LAA
101: DAKLAKDFQA VLKEFQKAQR LAAERETAYT PFVPQAVLPS SYTASEVDVG SDKSPEQRAL LVESRRQEVL FLDNEIAFNE AIIEEREQGI QEIQQQIGEV
201: NEIFKDLAVL VHEQGAMIDD IGSNIENSHA ATAQAKSQLA KASKTQRSNS SLTCLLLVIF GIVLLIVIIV LAA
001: MSFQDLESGR GRSTRKFNGG RQDSTQAVAS GIFQINTGVS TFQRLVNTLG TPKDTPELRE KLHKTRLHIG QLVKDTSAKL KEASETDHQS GVNPSKKIAD
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA
Arabidopsis Description
SYP22VAM3 [Source:UniProtKB/TrEMBL;Acc:A0A178UDT6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.