CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45193	Soybean	cytosol	92.11	62.5
KRH01502	Soybean	cytosol, endoplasmic reticulum, nucleus	92.11	62.5
KRH31640	Soybean	cytosol, nucleus	92.11	62.5
KRH69076	Soybean	nucleus	85.53	60.75
VIT_07s0031g01230.t01	Wine grape	cytosol	85.53	58.04
CDY65281	Canola	cytosol	78.95	53.57
CDY18539	Canola	cytosol	78.95	53.57
AT1G36240.1	Thale cress	cytosol	78.95	53.57
CDX99322	Canola	cytosol	78.95	53.57
CDX92266	Canola	cytosol	78.95	53.57
CDX82330	Canola	cytosol	78.95	53.57
CDX75983	Canola	cytosol	78.95	53.57
Bra037566.1-P	Field mustard	cytosol	78.95	53.57
Bra022351.1-P	Field mustard	cytosol	78.95	53.57
Bra001719.1-P	Field mustard	cytosol	78.95	53.57
AT3G18740.1	Thale cress	cytosol	78.95	53.57
PGSC0003DMT400070814	Potato	cytosol	77.63	52.21
Solyc04g072660.2.1	Tomato	nucleus	77.63	52.21
EER90361	Sorghum	cytosol	76.32	51.79
EES18421	Sorghum	cytosol	76.32	51.79
Zm00001d014749_P001	Maize	plastid	76.32	51.79
EER90362	Sorghum	cytosol	75.0	50.89
Zm00001d008245_P001	Maize	plastid	75.0	50.89
CDX88400	Canola	cytosol	75.0	50.89
CDX87493	Canola	cytosol	75.0	50.89
CDX79241	Canola	cytosol	75.0	50.89
CDX68035	Canola	extracellular	75.0	50.89
Bra003662.1-P	Field mustard	cytosol	75.0	50.89
Os01t0276000-01	Rice	cytosol, nucleus	73.68	50.45
AT1G77940.1	Thale cress	cytosol	73.68	50.0
TraesCS1D01G306800.1	Wheat	cytosol	69.74	47.32
TraesCS1A01G307400.1	Wheat	cytosol	69.74	47.32
Os05t0490100-01	Rice	cytosol, nucleus	68.42	46.43
HORVU0Hr1G023290.1	Barley	cytosol	68.42	46.02
Os01t0812800-01	Rice	cytosol	65.79	44.64
CDY14643	Canola	cytosol	61.84	41.96
TraesCS3A01G187900.1	Wheat	golgi, nucleus, unclear	61.84	41.59
TraesCS3D01G191800.1	Wheat	cytosol	61.84	41.59
HORVU1Hr1G068640.1	Barley	plasma membrane	69.74	38.69
VIT_18s0001g04760.t01	Wine grape	plastid	76.32	37.66
TraesCS7D01G480000.2	Wheat	mitochondrion	57.89	37.29
Zm00001d038535_P001	Maize	cytosol	64.47	34.51
HORVU7Hr1G110660.1	Barley	plastid	64.47	27.53

Protein Annotations

MapMan:17.1.2.1.31	Gene3D:3.30.1330.30	EMBL:ACUP02008264	EnsemblPlantsGene:GLYMA_13G178600	GO:GO:0002181	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625
InterPro:IPR029064	UniProt:K7M0D2	EnsemblPlants:KRH20440	ProteinID:KRH20440	ProteinID:KRH20440.1	InterPro:L30e-like
PFAM:PF01248	PANTHER:PTHR11449	PANTHER:PTHR11449:SF8	InterPro:Ribosomal_L30e	InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45	SUPFAM:SSF55315
UniParc:UPI00029655B2	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:29225514..29225850

Molecular Weight (calculated)

8389.4 Da

IEP (calculated)

10.223

GRAVY (calculated)

-0.096

Length

76 amino acids

Sequence
(BLAST)

1: MVAAKKTHES INKRLLLTVL KSLRSSKGKL IIIANNCTPL RKSEIEYYAM LAKVGHNSII DPGDSDIIIK TLPGEQ

Best Arabidopsis Sequence Match ( AT1G36240.1 )
(BLAST)

001: MVAAKKTKKS HEGINSRLAL VMKSGKYTLG YKSVLKSLRS SKGKLILISS NCPPLRRSEI EYYAMLAKVG VHHYNRNNVD LGTACGKYFR VSCLSIVDPG
101: DSDIIKSLPG DQ

Arabidopsis Description

RPL30APutative 60S ribosomal protein L30-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8F7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.