CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68035	Canola	extracellular	88.39	88.39
CDX88400	Canola	cytosol	88.39	88.39
CDX79241	Canola	cytosol	88.39	88.39
CDX87493	Canola	cytosol	88.39	88.39
AT1G77940.1	Thale cress	cytosol	87.5	87.5
CDX82330	Canola	cytosol	85.71	85.71
CDX75983	Canola	cytosol	85.71	85.71
CDX92266	Canola	cytosol	85.71	85.71
CDX99322	Canola	cytosol	85.71	85.71
CDY18539	Canola	cytosol	85.71	85.71
CDY65281	Canola	cytosol	85.71	85.71
KRH01502	Soybean	cytosol, endoplasmic reticulum, nucleus	75.89	75.89
Solyc04g072660.2.1	Tomato	nucleus	75.89	75.22
PGSC0003DMT400070814	Potato	cytosol	75.89	75.22
KRH45193	Soybean	cytosol	75.0	75.0
KRH31640	Soybean	cytosol, nucleus	75.0	75.0
KRH69076	Soybean	nucleus	70.54	73.83
Os01t0276000-01	Rice	cytosol, nucleus	69.64	70.27
Zm00001d014749_P001	Maize	plastid	68.75	68.75
Zm00001d008245_P001	Maize	plastid	68.75	68.75
EER90361	Sorghum	cytosol	68.75	68.75
EES18421	Sorghum	cytosol	67.86	67.86
EER90362	Sorghum	cytosol	67.86	67.86
Os05t0490100-01	Rice	cytosol, nucleus	65.18	65.18
TraesCS1A01G307400.1	Wheat	cytosol	65.18	65.18
TraesCS1D01G306800.1	Wheat	cytosol	65.18	65.18
Os01t0812800-01	Rice	cytosol	64.29	64.29
TraesCS3A01G187900.1	Wheat	golgi, nucleus, unclear	64.29	63.72
TraesCS3D01G191800.1	Wheat	cytosol	64.29	63.72
HORVU0Hr1G023290.1	Barley	cytosol	62.5	61.95
KRH20440	Soybean	cytosol, mitochondrion	41.96	61.84
VIT_18s0001g04760.t01	Wine grape	plastid	74.11	53.9
TraesCS7D01G480000.2	Wheat	mitochondrion	56.25	53.39
HORVU1Hr1G068640.1	Barley	plasma membrane	65.18	53.28
Zm00001d038535_P001	Maize	cytosol	62.5	49.3
HORVU7Hr1G110660.1	Barley	plastid	62.5	39.33

Protein Annotations

MapMan:17.1.2.1.31	Gene3D:3.30.1330.30	GO:A0A078FQP8	UniProt:A0A078FQP8	EnsemblPlants:CDY14643	ProteinID:CDY14643
ProteinID:CDY14643.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00084415001	InterPro:IPR029064	InterPro:L30e-like	PFAM:PF01248	PANTHER:PTHR11449	PANTHER:PTHR11449:SF8
InterPro:Ribosomal_L30e	InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45	SUPFAM:SSF55315	UniParc:UPI0004EF19F2	:	:

Description

BnaC02g24700DBnaC02g24700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQP8]

Coordinates

chrLK032045:+:669969..670705

Molecular Weight (calculated)

12271.1 Da

IEP (calculated)

9.865

GRAVY (calculated)

0.046

Length

112 amino acids

Sequence
(BLAST)

001: MVTIKKTVCQ EVSRGINSRL ALVVKSGKYT LGYKSVLKSL RGSKGNLLIL ISSNCPPLRR SEIEYYAMLA KVGVHHYNGN NVDLGTACGK YFRVSCLSIC
101: DSDIIKSILG DQ

Best Arabidopsis Sequence Match ( AT1G36240.1 )
(BLAST)

001: MVAAKKTKKS HEGINSRLAL VMKSGKYTLG YKSVLKSLRS SKGKLILISS NCPPLRRSEI EYYAMLAKVG VHHYNRNNVD LGTACGKYFR VSCLSIVDPG
101: DSDIIKSLPG DQ

Arabidopsis Description

RPL30APutative 60S ribosomal protein L30-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8F7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.