Factsheet for Zm00001d014749_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90361	Sorghum	cytosol	100.0	100.0
EER90362	Sorghum	cytosol	99.11	99.11
Zm00001d008245_P001	Maize	plastid	99.11	99.11
Os01t0276000-01	Rice	cytosol, nucleus	97.32	98.2
TraesCS3D01G191800.1	Wheat	cytosol	87.5	86.73
TraesCS3B01G217500.1	Wheat	cytosol	87.5	86.73
TraesCS3A01G187900.1	Wheat	golgi, nucleus, unclear	87.5	86.73
KRH01502	Soybean	cytosol, endoplasmic reticulum, nucleus	85.71	85.71
Solyc11g071490.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, nucleus	84.82	84.82
KRH45193	Soybean	cytosol	84.82	84.82
KRH31640	Soybean	cytosol, nucleus	84.82	84.82
GSMUA_AchrUn_...	Banana	cytosol	84.82	84.82
PGSC0003DMT400048132	Potato	cytosol	84.82	84.82
Solyc01g009100.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	83.93	83.93
GSMUA_Achr8P09330_001	Banana	cytosol	83.93	83.93
KRH69076	Soybean	nucleus	77.68	81.31
VIT_13s0064g00850.t01	Wine grape	cytosol	80.36	80.36
CDX92266	Canola	cytosol	78.57	78.57
CDX99322	Canola	cytosol	78.57	78.57
CDY18539	Canola	cytosol	78.57	78.57
CDY65281	Canola	cytosol	78.57	78.57
CDX82330	Canola	cytosol	78.57	78.57
CDX75983	Canola	cytosol	78.57	78.57
Bra037566.1-P	Field mustard	cytosol	78.57	78.57
Bra022351.1-P	Field mustard	cytosol	78.57	78.57
Bra001719.1-P	Field mustard	cytosol	78.57	78.57
Bra003662.1-P	Field mustard	cytosol	77.68	77.68
AT1G36240.1	Thale cress	cytosol	77.68	77.68
CDX88400	Canola	cytosol	77.68	77.68
CDX87493	Canola	cytosol	77.68	77.68
CDX79241	Canola	cytosol	77.68	77.68
CDX68035	Canola	extracellular	77.68	77.68
AT3G18740.1	Thale cress	cytosol	76.79	76.79
AT1G77940.1	Thale cress	cytosol	76.79	76.79
KRH20440	Soybean	cytosol, mitochondrion	51.79	76.32
PGSC0003DMT400070814	Potato	cytosol	76.79	76.11
Solyc04g072660.2.1	Tomato	nucleus	76.79	76.11
CDY14643	Canola	cytosol	68.75	68.75
GSMUA_Achr11P...	Banana	plastid	82.14	63.45
Zm00001d038535_P001	Maize	cytosol	79.46	62.68

Protein Annotations

EntrezGene:100502201	MapMan:17.1.2.1.31	Gene3D:3.30.1330.30	ProteinID:AQK67093.1	EMBL:BT087383	UniProt:C4J986
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR029064
InterPro:L30e-like	HAMAP:MF_00481	PFAM:PF01248	ScanProsite:PS00709	ScanProsite:PS00993	PANTHER:PTHR11449
PANTHER:PTHR11449:SF6	InterPro:Ribosomal_L30e	InterPro:Ribosomal_L30e_CS	InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45	SUPFAM:SSF55315	UniParc:UPI0001A4C694
EnsemblPlantsGene:Zm00001d014749	EnsemblPlants:Zm00001d014749_P001	EnsemblPlants:Zm00001d014749_T001	:	:	:

Description

60S ribosomal protein L30-2

Coordinates

chr5:-:61285308..61288275

Molecular Weight (calculated)

12461.3 Da

IEP (calculated)

10.137

GRAVY (calculated)

-0.296

Length

112 amino acids

Sequence
(BLAST)

001: MVAAKKTKKS TDNINNKLQL VMKSGKYTLG YKTVLRTLRN SKSKLVIIAN NCPPLRKSEI EYYAMLAKVT VHHFHGNNVD LGTACGKYFR VCCLSIIDPG
101: DSDIIKTTPG EQ

Best Arabidopsis Sequence Match ( AT1G36240.1 )
(BLAST)

001: MVAAKKTKKS HEGINSRLAL VMKSGKYTLG YKSVLKSLRS SKGKLILISS NCPPLRRSEI EYYAMLAKVG VHHYNRNNVD LGTACGKYFR VSCLSIVDPG
101: DSDIIKSLPG DQ

Arabidopsis Description

RPL30APutative 60S ribosomal protein L30-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8F7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.