Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
endoplasmic reticulum: 29145071 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
29145071
doi
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g071490.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, nucleus | 91.96 | 91.96 |
| EER90362 | Sorghum | cytosol | 84.82 | 84.82 |
| Zm00001d014749_P001 | Maize | plastid | 83.93 | 83.93 |
| EER90361 | Sorghum | cytosol | 83.93 | 83.93 |
| Os01t0276000-01 | Rice | cytosol, nucleus | 83.04 | 83.78 |
| Solyc04g072660.2.1 | Tomato | nucleus | 83.93 | 83.19 |
| Zm00001d008245_P001 | Maize | plastid | 83.04 | 83.04 |
| EES18421 | Sorghum | cytosol | 80.36 | 80.36 |
| TraesCS3A01G187900.1 | Wheat | golgi, nucleus, unclear | 78.57 | 77.88 |
| TraesCS3D01G191800.1 | Wheat | cytosol | 78.57 | 77.88 |
| Os01t0812800-01 | Rice | cytosol | 77.68 | 77.68 |
| GSMUA_Achr11P... | Banana | cytosol | 57.14 | 77.11 |
| TraesCS1A01G307400.1 | Wheat | cytosol | 76.79 | 76.79 |
| TraesCS1D01G306800.1 | Wheat | cytosol | 76.79 | 76.79 |
| Os05t0490100-01 | Rice | cytosol, nucleus | 75.89 | 75.89 |
| HORVU0Hr1G023290.1 | Barley | cytosol | 74.11 | 73.45 |
| HORVU1Hr1G068640.1 | Barley | plasma membrane | 76.79 | 62.77 |
| TraesCS7D01G480000.2 | Wheat | mitochondrion | 65.18 | 61.86 |
| Zm00001d038535_P001 | Maize | cytosol | 74.11 | 58.45 |
| TraesCS4B01G163300.1 | Wheat | plasma membrane | 38.39 | 55.84 |
| HORVU7Hr1G110660.1 | Barley | plastid | 73.21 | 46.07 |
| GSMUA_Achr11P... | Banana | extracellular | 25.0 | 31.46 |
Protein Annotations
| MapMan:17.1.2.1.31 | Gene3D:3.30.1330.30 | GO:GO:0002181 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022625 | InterPro:IPR029064 | UniProt:K4ATA6 |
| InterPro:L30e-like | HAMAP:MF_00481 | PFAM:PF01248 | ScanProsite:PS00709 | ScanProsite:PS00993 | PANTHER:PTHR11449 |
| PANTHER:PTHR11449:SF9 | InterPro:Ribosomal_L30e | InterPro:Ribosomal_L30e_CS | InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45 | SUPFAM:SSF55315 | EnsemblPlantsGene:Solyc01g009100.2 |
| EnsemblPlants:Solyc01g009100.2.1 | UniParc:UPI0002763511 | : | : | : | : |
Description
No Description!
Coordinates
chr1:+:3112345..3115591
Molecular Weight (calculated)
12361.2 Da
IEP (calculated)
10.074
GRAVY (calculated)
-0.187
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAAKKTKKT HESINNRLAL VMKSGKYTLG YKTVLKTIRS SKAKLVIIAN NCPPIRKSEI EYYAMLAKVG VHHYNGNNVD LGTACGKYFR VCCLSIIDPG
101: DSDIIKSLPS DQ
101: DSDIIKSLPS DQ
001: MVAAKKTKKS HEGINSRLAL VMKSGKYTLG YKSVLKSLRS SKGKLILISS NCPPLRRSEI EYYAMLAKVG VHHYNRNNVD LGTACGKYFR VSCLSIVDPG
101: DSDIIKSLPG DQ
101: DSDIIKSLPG DQ
Arabidopsis Description
RPL30APutative 60S ribosomal protein L30-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8F7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.