Factsheet for Zm00001d038535_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18421	Sorghum	cytosol	70.42	89.29
Os05t0490100-01	Rice	cytosol, nucleus	67.61	85.71
TraesCS7B01G399800.1	Wheat	cytosol, golgi, plastid, unclear	66.2	85.45
TraesCS1D01G306800.1	Wheat	cytosol	65.49	83.04
TraesCS1B01G318200.1	Wheat	cytosol	65.49	83.04
TraesCS1A01G307400.1	Wheat	cytosol	65.49	83.04
Zm00001d008245_P001	Maize	plastid	63.38	80.36
Zm00001d014749_P001	Maize	plastid	62.68	79.46
Solyc11g071490.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, nucleus	61.97	78.57
PGSC0003DMT400048132	Potato	cytosol	61.97	78.57
KRH01502	Soybean	cytosol, endoplasmic reticulum, nucleus	61.27	77.68
KRH69076	Soybean	nucleus	58.45	77.57
GSMUA_AchrUn_...	Banana	cytosol	60.56	76.79
KRH45193	Soybean	cytosol	60.56	76.79
KRH31640	Soybean	cytosol, nucleus	60.56	76.79
VIT_13s0064g00850.t01	Wine grape	cytosol	59.86	75.89
GSMUA_Achr8P09330_001	Banana	cytosol	59.86	75.89
Solyc01g009100.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	58.45	74.11
Solyc04g072660.2.1	Tomato	nucleus	58.45	73.45
PGSC0003DMT400070814	Potato	cytosol	58.45	73.45
CDX79241	Canola	cytosol	54.93	69.64
AT1G77940.1	Thale cress	cytosol	54.93	69.64
Bra001719.1-P	Field mustard	cytosol	54.93	69.64
Bra003662.1-P	Field mustard	cytosol	54.93	69.64
Bra022351.1-P	Field mustard	cytosol	54.93	69.64
Bra037566.1-P	Field mustard	cytosol	54.93	69.64
CDX68035	Canola	extracellular	54.93	69.64
CDX75983	Canola	cytosol	54.93	69.64
CDX82330	Canola	cytosol	54.93	69.64
CDX87493	Canola	cytosol	54.93	69.64
CDX88400	Canola	cytosol	54.93	69.64
CDX92266	Canola	cytosol	54.93	69.64
CDX99322	Canola	cytosol	54.93	69.64
CDY65281	Canola	cytosol	54.93	69.64
CDY18539	Canola	cytosol	54.93	69.64
AT1G36240.1	Thale cress	cytosol	54.23	68.75
AT3G18740.1	Thale cress	cytosol	54.23	68.75
KRH20440	Soybean	cytosol, mitochondrion	34.51	64.47
TraesCS7D01G480000.2	Wheat	mitochondrion	52.11	62.71
CDY14643	Canola	cytosol	49.3	62.5
HORVU7Hr1G110660.1	Barley	plastid	70.42	56.18
GSMUA_Achr11P...	Banana	plastid	57.04	55.86

Protein Annotations

EntrezGene:100285769	MapMan:17.1.2.1.31	Gene3D:3.30.1330.30	UniProt:A0A1D6M723	ProteinID:AQK86865.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR029064	InterPro:L30e-like
PFAM:PF01248	ScanProsite:PS00709	ScanProsite:PS00993	PANTHER:PTHR11449	PANTHER:PTHR11449:SF6	InterPro:Ribosomal_L30e
InterPro:Ribosomal_L30e_CS	InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45	SUPFAM:SSF55315	UniParc:UPI0008430DCB	EnsemblPlantsGene:Zm00001d038535	EnsemblPlants:Zm00001d038535_P001
EnsemblPlants:Zm00001d038535_T001	:	:	:	:	:

Description

60S ribosomal protein L30-2

Coordinates

chr6:+:159533551..159536002

Molecular Weight (calculated)

16077.0 Da

IEP (calculated)

10.134

GRAVY (calculated)

0.044

Length

142 amino acids

Sequence
(BLAST)

001: MAPTKKSKKS TESINNKLQL VMKSGKYTLG YKTVLKTLRN SKGKLIIIAN NCPPLRKSEI EYYAMLAKVS VHHFHGNNVD LGTACGKYYR VCCLSIIDPG
101: SFLLNCHYLV SVRTVTAQFL GRHCTILRPY LFRIIICSDY II

Best Arabidopsis Sequence Match ( AT1G77940.1 )
(BLAST)

001: MVTEKKTKKS HEGINSRLAL VMKSGKYTLG YKSVLKSLRG SKGKLILIST NCPPLRRSEI EYYAMLAKVG VHHYNGNNVD LGTACGKYFR VSCLSIVDPG
101: DSDIIKSIPG DQ

Arabidopsis Description

RPL30B60S ribosomal protein L30-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ19]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.