Factsheet for VIT_13s0064g00850.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0031g01230.t01	Wine grape	cytosol	89.29	89.29
TraesCS7B01G399800.1	Wheat	cytosol, golgi, plastid, unclear	81.25	82.73
EES18421	Sorghum	cytosol	81.25	81.25
GSMUA_Achr8P09330_001	Banana	cytosol	81.25	81.25
Os01t0276000-01	Rice	cytosol, nucleus	80.36	81.08
EER90361	Sorghum	cytosol	80.36	80.36
Zm00001d014749_P001	Maize	plastid	80.36	80.36
GSMUA_AchrUn_...	Banana	cytosol	80.36	80.36
Zm00001d008245_P001	Maize	plastid	80.36	80.36
Os01t0812800-01	Rice	cytosol	80.36	80.36
TraesCS1D01G306800.1	Wheat	cytosol	80.36	80.36
TraesCS1A01G307400.1	Wheat	cytosol	80.36	80.36
TraesCS1B01G318200.1	Wheat	cytosol	80.36	80.36
EER90362	Sorghum	cytosol	79.46	79.46
Os05t0490100-01	Rice	cytosol, nucleus	79.46	79.46
HORVU0Hr1G023290.1	Barley	cytosol	76.79	76.11
TraesCS3A01G187900.1	Wheat	golgi, nucleus, unclear	74.11	73.45
TraesCS3B01G217500.1	Wheat	cytosol	74.11	73.45
TraesCS3D01G191800.1	Wheat	cytosol	74.11	73.45
HORVU1Hr1G068640.1	Barley	plasma membrane	80.36	65.69
TraesCS7D01G480000.2	Wheat	mitochondrion	68.75	65.25
GSMUA_Achr11P...	Banana	plastid	80.36	62.07
Zm00001d038535_P001	Maize	cytosol	75.89	59.86
VIT_18s0001g04760.t01	Wine grape	plastid	81.25	59.09
HORVU7Hr1G110660.1	Barley	plastid	76.79	48.31

Protein Annotations

EntrezGene:100267090	wikigene:100267090	MapMan:17.1.2.1.31	Gene3D:3.30.1330.30	UniProt:A5ADG9	EMBL:AM423763
ProteinID:CAN68909	ProteinID:CAN68909.1	ProteinID:CBI24893	ProteinID:CBI24893.3	EMBL:FN595509	GO:GO:0002181
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0022625	InterPro:IPR029064	InterPro:L30e-like	EntrezGene:LOC100267090	wikigene:LOC100267090	HAMAP:MF_00481
PFAM:PF01248	ScanProsite:PS00709	ScanProsite:PS00993	PANTHER:PTHR11449	PANTHER:PTHR11449:SF9	InterPro:Ribosomal_L30e
InterPro:Ribosomal_L30e_CS	InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45	SUPFAM:SSF55315	TIGR:TC53627	TIGR:TC54097	UniParc:UPI000151E55D
ArrayExpress:VIT_13s0064g00850	EnsemblPlantsGene:VIT_13s0064g00850	EnsemblPlants:VIT_13s0064g00850.t01	RefSeq:XP_002278806	RefSeq:XP_002278806.1	:

Description

No Description!

Coordinates

chr13:+:22693996..22697084

Molecular Weight (calculated)

12442.3 Da

IEP (calculated)

10.231

GRAVY (calculated)

-0.378

Length

112 amino acids

Sequence
(BLAST)

001: MAAPKKTKKT QENINNKLAL VMKSGKYTLG YKTVLKSLRS SKGKLILISN NCPPLRKSEI EYYAMLSKVS VHHFHGNNVD LGTACGKYFR VSCLSIVDPG
101: DSDIIKQMPS DH

Best Arabidopsis Sequence Match ( AT1G36240.1 )
(BLAST)

001: MVAAKKTKKS HEGINSRLAL VMKSGKYTLG YKSVLKSLRS SKGKLILISS NCPPLRRSEI EYYAMLAKVG VHHYNRNNVD LGTACGKYFR VSCLSIVDPG
101: DSDIIKSLPG DQ

Arabidopsis Description

RPL30APutative 60S ribosomal protein L30-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8F7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.