Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G187900.1 | Wheat | golgi, nucleus, unclear | 100.0 | 100.0 |
| TraesCS3D01G191800.1 | Wheat | cytosol | 100.0 | 100.0 |
| Zm00001d008245_P001 | Maize | plastid | 87.61 | 88.39 |
| Os01t0276000-01 | Rice | cytosol, nucleus | 86.73 | 88.29 |
| EER90361 | Sorghum | cytosol | 86.73 | 87.5 |
| Zm00001d014749_P001 | Maize | plastid | 86.73 | 87.5 |
| EER90362 | Sorghum | cytosol | 85.84 | 86.61 |
| TraesCS1B01G318200.1 | Wheat | cytosol | 83.19 | 83.93 |
| TraesCS7B01G399800.1 | Wheat | cytosol, golgi, plastid, unclear | 80.53 | 82.73 |
| GSMUA_AchrUn_... | Banana | cytosol | 76.99 | 77.68 |
| GSMUA_Achr8P09330_001 | Banana | cytosol | 76.11 | 76.79 |
| VIT_13s0064g00850.t01 | Wine grape | cytosol | 73.45 | 74.11 |
| TraesCS4B01G163300.1 | Wheat | plasma membrane | 41.59 | 61.04 |
| GSMUA_Achr11P... | Banana | plastid | 72.57 | 56.55 |
Protein Annotations
| MapMan:17.1.2.1.31 | Gene3D:3.30.1330.30 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR029064 | InterPro:L30e-like |
| HAMAP:MF_00481 | PFAM:PF01248 | ScanProsite:PS00709 | ScanProsite:PS00993 | PANTHER:PTHR11449 | PANTHER:PTHR11449:SF6 |
| InterPro:Ribosomal_L30e | InterPro:Ribosomal_L30e_CS | InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45 | SUPFAM:SSF55315 | EnsemblPlantsGene:TraesCS3B01G217500 | EnsemblPlants:TraesCS3B01G217500.1 |
Description
No Description!
Coordinates
chr3B:-:259910157..259912438
Molecular Weight (calculated)
12476.3 Da
IEP (calculated)
10.094
GRAVY (calculated)
-0.286
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTSTKKTKK SGDNINNKLQ LVMKSGKYTL GYKTVLRTLR NSKAKLVILA NNCPPLRKSE IEYYAMLAKI TVHHYHGNNV DLGTACGKYF RVCCLSIIDP
101: GDSDIINATP AGQ
101: GDSDIINATP AGQ
001: MVTEKKTKKS HEGINSRLAL VMKSGKYTLG YKSVLKSLRG SKGKLILIST NCPPLRRSEI EYYAMLAKVG VHHYNGNNVD LGTACGKYFR VSCLSIVDPG
101: DSDIIKSIPG DQ
101: DSDIIKSIPG DQ
Arabidopsis Description
RPL30B60S ribosomal protein L30-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ19]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.