Factsheet for Os01t0276000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
cytosol: 19685898
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90361	Sorghum	cytosol	98.2	97.32
Zm00001d014749_P001	Maize	plastid	98.2	97.32
EER90362	Sorghum	cytosol	97.3	96.43
Zm00001d008245_P001	Maize	plastid	97.3	96.43
TraesCS3A01G187900.1	Wheat	golgi, nucleus, unclear	88.29	86.73
TraesCS3B01G217500.1	Wheat	cytosol	88.29	86.73
TraesCS3D01G191800.1	Wheat	cytosol	88.29	86.73
Os05t0490100-01	Rice	cytosol, nucleus	86.49	85.71
GSMUA_Achr8P09330_001	Banana	cytosol	85.59	84.82
GSMUA_AchrUn_...	Banana	cytosol	84.68	83.93
KRH01502	Soybean	cytosol, endoplasmic reticulum, nucleus	84.68	83.93
KRH45193	Soybean	cytosol	83.78	83.04
KRH31640	Soybean	cytosol, nucleus	83.78	83.04
PGSC0003DMT400048132	Potato	cytosol	83.78	83.04
Solyc01g009100.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	83.78	83.04
Solyc11g071490.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, nucleus	83.78	83.04
VIT_13s0064g00850.t01	Wine grape	cytosol	81.08	80.36
KRH69076	Soybean	nucleus	76.58	79.44
CDY65281	Canola	cytosol	79.28	78.57
CDY18539	Canola	cytosol	79.28	78.57
CDX99322	Canola	cytosol	79.28	78.57
CDX92266	Canola	cytosol	79.28	78.57
CDX82330	Canola	cytosol	79.28	78.57
CDX75983	Canola	cytosol	79.28	78.57
Bra037566.1-P	Field mustard	cytosol	79.28	78.57
Bra022351.1-P	Field mustard	cytosol	79.28	78.57
Bra001719.1-P	Field mustard	cytosol	79.28	78.57
CDX88400	Canola	cytosol	78.38	77.68
CDX87493	Canola	cytosol	78.38	77.68
CDX79241	Canola	cytosol	78.38	77.68
Os01t0812800-01	Rice	cytosol	78.38	77.68
CDX68035	Canola	extracellular	78.38	77.68
Bra003662.1-P	Field mustard	cytosol	78.38	77.68
AT1G36240.1	Thale cress	cytosol	78.38	77.68
AT1G77940.1	Thale cress	cytosol	77.48	76.79
AT3G18740.1	Thale cress	cytosol	77.48	76.79
Solyc04g072660.2.1	Tomato	nucleus	77.48	76.11
PGSC0003DMT400070814	Potato	cytosol	77.48	76.11
KRH20440	Soybean	cytosol, mitochondrion	50.45	73.68
CDY14643	Canola	cytosol	70.27	69.64
GSMUA_Achr11P...	Banana	plastid	81.98	62.76

Protein Annotations

MapMan:17.1.2.1.31	Gene3D:3.30.1330.30	EntrezGene:4324441	EMBL:AK058917	EMBL:AK119715	EMBL:AK122128
ProteinID:BAA88178.1	ProteinID:BAF04638.1	ProteinID:BAS71546.1	ProteinID:EEE54319.1	GO:GO:0002181	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625
InterPro:IPR029064	InterPro:L30e-like	HAMAP:MF_00481	EnsemblPlantsGene:Os01g0276000	EnsemblPlants:Os01t0276000-01	PFAM:PF01248
ScanProsite:PS00709	ScanProsite:PS00993	PANTHER:PTHR11449	PANTHER:PTHR11449:SF6	UniProt:Q9SDG6	InterPro:Ribosomal_L30e
InterPro:Ribosomal_L30e_CS	InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45	SUPFAM:SSF55315	UniParc:UPI0000133EF3	RefSeq:XP_015622112.1	:

Description

RPL30Similar to 60S ribosomal protein L30. (Os01t0276000-01)

Coordinates

chr1:-:9658174..9661275

Molecular Weight (calculated)

12364.2 Da

IEP (calculated)

10.137

GRAVY (calculated)

-0.284

Length

111 amino acids

Sequence
(BLAST)

001: MVAAKKTKKS TDNINNKLQL VMKSGKYTLG YKTVLRTLRN SKAKLVIISN NCPPLRKSEI EYYAMLAKVT VHHFHGNNVD LGTACGKYFR VCCLSIIDPG
101: DSDIIKTTGE Q

Best Arabidopsis Sequence Match ( AT1G36240.1 )
(BLAST)

001: MVAAKKTKKS HEGINSRLAL VMKSGKYTLG YKSVLKSLRS SKGKLILISS NCPPLRRSEI EYYAMLAKVG VHHYNRNNVD LGTACGKYFR VSCLSIVDPG
101: DSDIIKSLPG DQ

Arabidopsis Description

RPL30APutative 60S ribosomal protein L30-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8F7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.