CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68035	Canola	extracellular	100.0	100.0
CDX87493	Canola	cytosol	100.0	100.0
CDX88400	Canola	cytosol	100.0	100.0
AT1G77940.1	Thale cress	cytosol	98.21	98.21
CDX75983	Canola	cytosol	97.32	97.32
CDX82330	Canola	cytosol	97.32	97.32
CDX92266	Canola	cytosol	97.32	97.32
CDX99322	Canola	cytosol	97.32	97.32
CDY18539	Canola	cytosol	97.32	97.32
CDY65281	Canola	cytosol	97.32	97.32
CDY14643	Canola	cytosol	88.39	88.39
KRH01502	Soybean	cytosol, endoplasmic reticulum, nucleus	85.71	85.71
KRH45193	Soybean	cytosol	84.82	84.82
KRH31640	Soybean	cytosol, nucleus	84.82	84.82
PGSC0003DMT400070814	Potato	cytosol	83.93	83.19
Solyc04g072660.2.1	Tomato	nucleus	83.93	83.19
KRH69076	Soybean	nucleus	79.46	83.18
Os01t0276000-01	Rice	cytosol, nucleus	77.68	78.38
Zm00001d014749_P001	Maize	plastid	77.68	77.68
EER90361	Sorghum	cytosol	77.68	77.68
Zm00001d008245_P001	Maize	plastid	76.79	76.79
EES18421	Sorghum	cytosol	76.79	76.79
EER90362	Sorghum	cytosol	76.79	76.79
KRH20440	Soybean	cytosol, mitochondrion	50.89	75.0
Os01t0812800-01	Rice	cytosol	73.21	73.21
TraesCS1A01G307400.1	Wheat	cytosol	73.21	73.21
TraesCS1D01G306800.1	Wheat	cytosol	73.21	73.21
Os05t0490100-01	Rice	cytosol, nucleus	72.32	72.32
TraesCS3A01G187900.1	Wheat	golgi, nucleus, unclear	71.43	70.8
TraesCS3D01G191800.1	Wheat	cytosol	71.43	70.8
HORVU0Hr1G023290.1	Barley	cytosol	70.54	69.91
VIT_18s0001g04760.t01	Wine grape	plastid	83.93	61.04
HORVU1Hr1G068640.1	Barley	plasma membrane	73.21	59.85
TraesCS7D01G480000.2	Wheat	mitochondrion	61.61	58.47
Zm00001d038535_P001	Maize	cytosol	69.64	54.93
HORVU7Hr1G110660.1	Barley	plastid	69.64	43.82

Protein Annotations

MapMan:17.1.2.1.31	Gene3D:3.30.1330.30	GO:A0A078CPW9	EnsemblPlants:CDX79241	ProteinID:CDX79241	ProteinID:CDX79241.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00131849001	InterPro:IPR029064	InterPro:L30e-like	HAMAP:MF_00481
PFAM:PF01248	ScanProsite:PS00709	ScanProsite:PS00993	PANTHER:PTHR11449	PANTHER:PTHR11449:SF8	InterPro:Ribosomal_L30e
InterPro:Ribosomal_L30e_CS	InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45	SUPFAM:SSF55315	UniParc:UPI0002541468	:	:

Description

BnaC06g20620D

Coordinates

chrLK031817:-:603205..604434

Molecular Weight (calculated)

12219.0 Da

IEP (calculated)

10.212

GRAVY (calculated)

-0.243

Length

112 amino acids

Sequence
(BLAST)

001: MVTAKKTKKS HEGINSRLAL VMKSGKYTLG YKSVLKSLRG SKGKLILISS NCPPLRRSEI EYYAMLAKVG VHHYNGNNVD LGTACGKYFR VSCLSIVDPG
101: DSDIIKSIPG DQ

Best Arabidopsis Sequence Match ( AT1G77940.1 )
(BLAST)

001: MVTEKKTKKS HEGINSRLAL VMKSGKYTLG YKSVLKSLRG SKGKLILIST NCPPLRRSEI EYYAMLAKVG VHHYNGNNVD LGTACGKYFR VSCLSIVDPG
101: DSDIIKSIPG DQ

Arabidopsis Description

RPL30B60S ribosomal protein L30-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ19]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.