Factsheet for VIT_18s0001g04760.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0031g01230.t01	Wine grape	cytosol	63.64	87.5
KRH69076	Soybean	nucleus	59.74	85.98
CDX75983	Canola	cytosol	62.34	85.71
CDY18539	Canola	cytosol	62.34	85.71
CDY65281	Canola	cytosol	62.34	85.71
CDX99322	Canola	cytosol	62.34	85.71
CDX92266	Canola	cytosol	62.34	85.71
CDX82330	Canola	cytosol	62.34	85.71
Bra037566.1-P	Field mustard	cytosol	62.34	85.71
Bra022351.1-P	Field mustard	cytosol	62.34	85.71
Bra001719.1-P	Field mustard	cytosol	62.34	85.71
KRH01502	Soybean	cytosol, endoplasmic reticulum, nucleus	61.69	84.82
AT3G18740.1	Thale cress	cytosol	61.69	84.82
AT1G36240.1	Thale cress	cytosol	61.69	84.82
AT1G77940.1	Thale cress	cytosol	61.04	83.93
KRH45193	Soybean	cytosol	61.04	83.93
KRH31640	Soybean	cytosol, nucleus	61.04	83.93
CDX88400	Canola	cytosol	61.04	83.93
CDX87493	Canola	cytosol	61.04	83.93
CDX79241	Canola	cytosol	61.04	83.93
CDX68035	Canola	extracellular	61.04	83.93
Bra003662.1-P	Field mustard	cytosol	61.04	83.93
VIT_13s0064g00850.t01	Wine grape	cytosol	59.09	81.25
KRH20440	Soybean	cytosol, mitochondrion	37.66	76.32
CDY14643	Canola	cytosol	53.9	74.11

Protein Annotations

EntrezGene:100253901	wikigene:100253901	MapMan:17.1.2.1.31	Gene3D:3.30.1330.30	ProteinID:CCB45547	ProteinID:CCB45547.1
UniProt:F6H0V0	EMBL:FN595227	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:IPR029064	InterPro:L30e-like
EntrezGene:LOC100253901	wikigene:LOC100253901	HAMAP:MF_00481	PFAM:PF01248	ScanProsite:PS00709	ScanProsite:PS00993
PANTHER:PTHR11449	PANTHER:PTHR11449:SF9	InterPro:Ribosomal_L30e	InterPro:Ribosomal_L30e_CS	InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45	SUPFAM:SSF55315
TIGR:TC67900	UniParc:UPI000210AC86	ArrayExpress:VIT_18s0001g04760	EnsemblPlantsGene:VIT_18s0001g04760	EnsemblPlants:VIT_18s0001g04760.t01	RefSeq:XP_002285813
RefSeq:XP_002285813.1	RefSeq:XP_002285814	RefSeq:XP_002285814.1	:	:	:

Description

No Description!

Coordinates

chr18:-:3976114..3980165

Molecular Weight (calculated)

16640.2 Da

IEP (calculated)

9.947

GRAVY (calculated)

-0.275

Length

154 amino acids

Sequence
(BLAST)

001: MGFAHVISAC KGPPPSPGAD DKKVKNPSST ALLLLPRLWC YNSGVSSPTK KSHEGINNRL ALVMKSGKYT LGHKTVLRSL RSSKGKLILI SNNCPPLRKS
101: EIEYYAMLSK VGVHHYNGNN VDLGTACGKY FRVSCLSIID PGDSDIINTL PGDQ

Best Arabidopsis Sequence Match ( AT1G36240.1 )
(BLAST)

001: MVAAKKTKKS HEGINSRLAL VMKSGKYTLG YKSVLKSLRS SKGKLILISS NCPPLRRSEI EYYAMLAKVG VHHYNRNNVD LGTACGKYFR VSCLSIVDPG
101: DSDIIKSLPG DQ

Arabidopsis Description

RPL30APutative 60S ribosomal protein L30-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8F7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.