CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45193	Soybean	cytosol	95.33	91.07
KRH31640	Soybean	cytosol, nucleus	95.33	91.07
KRH01502	Soybean	cytosol, endoplasmic reticulum, nucleus	94.39	90.18
VIT_07s0031g01230.t01	Wine grape	cytosol	89.72	85.71
KRH20440	Soybean	cytosol, mitochondrion	60.75	85.53
PGSC0003DMT400070814	Potato	cytosol	86.92	82.3
Solyc04g072660.2.1	Tomato	nucleus	86.92	82.3
EES18421	Sorghum	cytosol	85.98	82.14
CDY18539	Canola	cytosol	84.11	80.36
CDY65281	Canola	cytosol	84.11	80.36
CDX99322	Canola	cytosol	84.11	80.36
CDX92266	Canola	cytosol	84.11	80.36
CDX82330	Canola	cytosol	84.11	80.36
AT3G18740.1	Thale cress	cytosol	84.11	80.36
Bra001719.1-P	Field mustard	cytosol	84.11	80.36
Bra022351.1-P	Field mustard	cytosol	84.11	80.36
Bra037566.1-P	Field mustard	cytosol	84.11	80.36
CDX75983	Canola	cytosol	84.11	80.36
CDX87493	Canola	cytosol	83.18	79.46
AT1G77940.1	Thale cress	cytosol	83.18	79.46
Bra003662.1-P	Field mustard	cytosol	83.18	79.46
CDX68035	Canola	extracellular	83.18	79.46
AT1G36240.1	Thale cress	cytosol	83.18	79.46
CDX79241	Canola	cytosol	83.18	79.46
CDX88400	Canola	cytosol	83.18	79.46
Zm00001d008245_P001	Maize	plastid	81.31	77.68
EER90361	Sorghum	cytosol	81.31	77.68
Zm00001d014749_P001	Maize	plastid	81.31	77.68
EER90362	Sorghum	cytosol	80.37	76.79
Os05t0490100-01	Rice	cytosol, nucleus	80.37	76.79
Os01t0276000-01	Rice	cytosol, nucleus	79.44	76.58
HORVU0Hr1G023290.1	Barley	cytosol	80.37	76.11
TraesCS1A01G307400.1	Wheat	cytosol	79.44	75.89
TraesCS1D01G306800.1	Wheat	cytosol	79.44	75.89
Os01t0812800-01	Rice	cytosol	78.5	75.0
TraesCS3A01G187900.1	Wheat	golgi, nucleus, unclear	76.64	72.57
TraesCS3D01G191800.1	Wheat	cytosol	76.64	72.57
CDY14643	Canola	cytosol	73.83	70.54
TraesCS7D01G480000.2	Wheat	mitochondrion	70.09	63.56
HORVU1Hr1G068640.1	Barley	plasma membrane	79.44	62.04
VIT_18s0001g04760.t01	Wine grape	plastid	85.98	59.74
Zm00001d038535_P001	Maize	cytosol	77.57	58.45
HORVU7Hr1G110660.1	Barley	plastid	75.7	45.51

Protein Annotations

MapMan:17.1.2.1.31	Gene3D:3.30.1330.30	EMBL:ACUP02000687	EnsemblPlantsGene:GLYMA_02G002300	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	UniProt:I1JB54	InterPro:IPR029064	EnsemblPlants:KRH69076
ProteinID:KRH69076	ProteinID:KRH69076.1	InterPro:L30e-like	HAMAP:MF_00481	PFAM:PF01248	ScanProsite:PS00709
ScanProsite:PS00993	PANTHER:PTHR11449	PANTHER:PTHR11449:SF9	InterPro:Ribosomal_L30e	InterPro:Ribosomal_L30e_CS	InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45
SUPFAM:SSF55315	UniParc:UPI00023BEBFB	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:271520..273419

Molecular Weight (calculated)

11887.6 Da

IEP (calculated)

9.825

GRAVY (calculated)

-0.274

Length

107 amino acids

Sequence
(BLAST)

001: MQKKTHESIN NRLALVMKSG KFTLGYKTVL KSLRNSKGKL IIIANNCPPL RKSEIEYYAM LAKVGVHHYN GNNVDLGTAC GKYYRVCCLS IIDPGDSDII
101: KTLPGDQ

Best Arabidopsis Sequence Match ( AT3G18740.1 )
(BLAST)

001: MVAEKKAKKS HEGINSRLAL VMKSGKYTLG YKSVLKSLRS SKGKLILISS NCPPLRRSEI EYYAMLAKVG VHRYNGNNVD LGTACGKYFR VSCLSIVDPG
101: DSDIIKTLPG DQ

Arabidopsis Description

RPL30C60S ribosomal protein L30-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSA3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.