Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400070814 | Potato | cytosol | 100.0 | 100.0 |
| VIT_07s0031g01230.t01 | Wine grape | cytosol | 89.38 | 90.18 |
| KRH69076 | Soybean | nucleus | 82.3 | 86.92 |
| Solyc11g071490.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, nucleus | 85.84 | 86.61 |
| KRH01502 | Soybean | cytosol, endoplasmic reticulum, nucleus | 84.96 | 85.71 |
| KRH45193 | Soybean | cytosol | 84.07 | 84.82 |
| KRH31640 | Soybean | cytosol, nucleus | 84.07 | 84.82 |
| CDX99322 | Canola | cytosol | 83.19 | 83.93 |
| Solyc01g009100.2.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 83.19 | 83.93 |
| CDY65281 | Canola | cytosol | 83.19 | 83.93 |
| CDY18539 | Canola | cytosol | 83.19 | 83.93 |
| CDX92266 | Canola | cytosol | 83.19 | 83.93 |
| CDX87493 | Canola | cytosol | 83.19 | 83.93 |
| AT1G77940.1 | Thale cress | cytosol | 83.19 | 83.93 |
| Bra001719.1-P | Field mustard | cytosol | 83.19 | 83.93 |
| Bra003662.1-P | Field mustard | cytosol | 83.19 | 83.93 |
| Bra022351.1-P | Field mustard | cytosol | 83.19 | 83.93 |
| Bra037566.1-P | Field mustard | cytosol | 83.19 | 83.93 |
| CDX68035 | Canola | extracellular | 83.19 | 83.93 |
| CDX75983 | Canola | cytosol | 83.19 | 83.93 |
| CDX79241 | Canola | cytosol | 83.19 | 83.93 |
| CDX82330 | Canola | cytosol | 83.19 | 83.93 |
| CDX88400 | Canola | cytosol | 83.19 | 83.93 |
| AT1G36240.1 | Thale cress | cytosol | 82.3 | 83.04 |
| AT3G18740.1 | Thale cress | cytosol | 81.42 | 82.14 |
| EES18421 | Sorghum | cytosol | 80.53 | 81.25 |
| KRH20440 | Soybean | cytosol, mitochondrion | 52.21 | 77.63 |
| Os01t0276000-01 | Rice | cytosol, nucleus | 76.11 | 77.48 |
| Zm00001d008245_P001 | Maize | plastid | 76.11 | 76.79 |
| Zm00001d014749_P001 | Maize | plastid | 76.11 | 76.79 |
| EER90361 | Sorghum | cytosol | 76.11 | 76.79 |
| EER90362 | Sorghum | cytosol | 75.22 | 75.89 |
| CDY14643 | Canola | cytosol | 75.22 | 75.89 |
| Os05t0490100-01 | Rice | cytosol, nucleus | 74.34 | 75.0 |
| TraesCS1A01G307400.1 | Wheat | cytosol | 74.34 | 75.0 |
| TraesCS1D01G306800.1 | Wheat | cytosol | 74.34 | 75.0 |
| Os01t0812800-01 | Rice | cytosol | 73.45 | 74.11 |
| TraesCS3A01G187900.1 | Wheat | golgi, nucleus, unclear | 73.45 | 73.45 |
| TraesCS3D01G191800.1 | Wheat | cytosol | 73.45 | 73.45 |
| HORVU0Hr1G023290.1 | Barley | cytosol | 72.57 | 72.57 |
| TraesCS7D01G480000.2 | Wheat | mitochondrion | 64.6 | 61.86 |
| HORVU1Hr1G068640.1 | Barley | plasma membrane | 74.34 | 61.31 |
| Zm00001d038535_P001 | Maize | cytosol | 73.45 | 58.45 |
| HORVU7Hr1G110660.1 | Barley | plastid | 72.57 | 46.07 |
Protein Annotations
| MapMan:17.1.2.1.31 | Gene3D:3.30.1330.30 | GO:GO:0002181 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022625 | InterPro:IPR029064 | UniProt:K4BTQ3 |
| InterPro:L30e-like | PFAM:PF01248 | ScanProsite:PS00709 | ScanProsite:PS00993 | PANTHER:PTHR11449 | PANTHER:PTHR11449:SF9 |
| InterPro:Ribosomal_L30e | InterPro:Ribosomal_L30e_CS | InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45 | SUPFAM:SSF55315 | EnsemblPlantsGene:Solyc04g072660.2 | EnsemblPlants:Solyc04g072660.2.1 |
| UniParc:UPI0002766FC5 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4:-:59626256..59628042
Molecular Weight (calculated)
12434.3 Da
IEP (calculated)
10.357
GRAVY (calculated)
-0.303
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTTGKKSKR THESINNRLA LVMKSGKYTL GYKTVLKTLR TSKGKLILIS NNCPPLRKSE IEYYAMLAKV GVHHFNGNNV DLGTACGKFH RVSCLSIIDP
101: GDSDIIKSLP GDQ
101: GDSDIIKSLP GDQ
001: MVTEKKTKKS HEGINSRLAL VMKSGKYTLG YKSVLKSLRG SKGKLILIST NCPPLRRSEI EYYAMLAKVG VHHYNGNNVD LGTACGKYFR VSCLSIVDPG
101: DSDIIKSIPG DQ
101: DSDIIKSIPG DQ
Arabidopsis Description
RPL30B60S ribosomal protein L30-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ19]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.