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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:
  • plastid 1
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, endoplasmic reticulum, nucleus
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH45193 Soybean cytosol 99.11 99.11
KRH31640 Soybean cytosol, nucleus 99.11 99.11
KRH69076 Soybean nucleus 90.18 94.39
VIT_07s0031g01230.t01 Wine grape cytosol 92.86 92.86
KRH20440 Soybean cytosol, mitochondrion 62.5 92.11
CDX92266 Canola cytosol 88.39 88.39
CDY65281 Canola cytosol 88.39 88.39
CDY18539 Canola cytosol 88.39 88.39
CDX99322 Canola cytosol 88.39 88.39
CDX82330 Canola cytosol 88.39 88.39
Bra001719.1-P Field mustard cytosol 88.39 88.39
CDX75983 Canola cytosol 88.39 88.39
Bra022351.1-P Field mustard cytosol 88.39 88.39
Bra037566.1-P Field mustard cytosol 88.39 88.39
AT1G36240.1 Thale cress cytosol 87.5 87.5
AT3G18740.1 Thale cress cytosol 86.61 86.61
CDX87493 Canola cytosol 85.71 85.71
Bra003662.1-P Field mustard cytosol 85.71 85.71
EES18421 Sorghum cytosol 85.71 85.71
EER90361 Sorghum cytosol 85.71 85.71
CDX68035 Canola extracellular 85.71 85.71
Zm00001d014749_P001 Maize plastid 85.71 85.71
CDX88400 Canola cytosol 85.71 85.71
CDX79241 Canola cytosol 85.71 85.71
PGSC0003DMT400070814 Potato cytosol 85.71 84.96
Solyc04g072660.2.1 Tomato nucleus 85.71 84.96
AT1G77940.1 Thale cress cytosol 84.82 84.82
Zm00001d008245_P001 Maize plastid 84.82 84.82
EER90362 Sorghum cytosol 84.82 84.82
Os01t0276000-01 Rice cytosol, nucleus 83.93 84.68
TraesCS1A01G307400.1 Wheat cytosol 81.25 81.25
TraesCS1D01G306800.1 Wheat cytosol 81.25 81.25
Os05t0490100-01 Rice cytosol, nucleus 80.36 80.36
Os01t0812800-01 Rice cytosol 79.46 79.46
HORVU0Hr1G023290.1 Barley cytosol 78.57 77.88
TraesCS3A01G187900.1 Wheat golgi, nucleus, unclear 76.79 76.11
TraesCS3D01G191800.1 Wheat cytosol 76.79 76.11
CDY14643 Canola cytosol 75.89 75.89
HORVU1Hr1G068640.1 Barley plasma membrane 81.25 66.42
TraesCS7D01G480000.2 Wheat mitochondrion 69.64 66.1
VIT_18s0001g04760.t01 Wine grape plastid 84.82 61.69
Zm00001d038535_P001 Maize cytosol 77.68 61.27
HORVU7Hr1G110660.1 Barley plastid 77.68 48.88
Protein Annotations
EntrezGene:100806260MapMan:17.1.2.1.31Gene3D:3.30.1330.30EMBL:ACUP02011516EnsemblPlantsGene:GLYMA_18G281200GO:GO:0002181
GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003735GO:GO:0005198GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005829GO:GO:0005840
GO:GO:0006412GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0019538
GO:GO:0022625UniProt:I1N4X6InterPro:IPR029064EnsemblPlants:KRH01502ProteinID:KRH01502ProteinID:KRH01502.1
InterPro:L30e-likeHAMAP:MF_00481PFAM:PF01248ScanProsite:PS00709ScanProsite:PS00993PANTHER:PTHR11449
PANTHER:PTHR11449:SF9InterPro:Ribosomal_L30eInterPro:Ribosomal_L30e_CSInterPro:Ribosomal_L7Ae/L30e/S12e/Gad45SUPFAM:SSF55315UniParc:UPI000233EFB4
Description
hypothetical protein
Coordinates
chr18:-:56210047..56212089
Molecular Weight (calculated)
12361.2 Da
IEP (calculated)
10.016
GRAVY (calculated)
-0.249
Length
112 amino acids
Sequence
(BLAST)
001: MVAAKKTKKT HESINNRLAL VMKSGKYTLG YKTVLKSLRS SKGKLIIIAN NCPPLRKSEI EYYAMLAKVG VHHYNGNNVD LGTACGKYYR VCCLSIIDPG
101: DSDIIKTLPG EQ
Best Arabidopsis Sequence Match ( AT1G36240.1 )
(BLAST)
001: MVAAKKTKKS HEGINSRLAL VMKSGKYTLG YKSVLKSLRS SKGKLILISS NCPPLRRSEI EYYAMLAKVG VHHYNRNNVD LGTACGKYFR VSCLSIVDPG
101: DSDIIKSLPG DQ
Arabidopsis Description
RPL30APutative 60S ribosomal protein L30-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8F7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.