Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
29385242
|
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G306800.1 | Wheat | cytosol | 81.02 | 99.11 |
| TraesCS1B01G318200.1 | Wheat | cytosol | 81.02 | 99.11 |
| TraesCS1A01G307400.1 | Wheat | cytosol | 81.02 | 99.11 |
| HORVU0Hr1G023290.1 | Barley | cytosol | 76.64 | 92.92 |
| Os05t0490100-01 | Rice | cytosol, nucleus | 75.18 | 91.96 |
| EES18421 | Sorghum | cytosol | 73.72 | 90.18 |
| KRH01502 | Soybean | cytosol, endoplasmic reticulum, nucleus | 66.42 | 81.25 |
| VIT_13s0064g00850.t01 | Wine grape | cytosol | 65.69 | 80.36 |
| KRH45193 | Soybean | cytosol | 65.69 | 80.36 |
| KRH31640 | Soybean | cytosol, nucleus | 65.69 | 80.36 |
| PGSC0003DMT400048132 | Potato | cytosol | 64.96 | 79.46 |
| Solyc11g071490.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, nucleus | 64.96 | 79.46 |
| GSMUA_AchrUn_... | Banana | cytosol | 64.96 | 79.46 |
| KRH69076 | Soybean | nucleus | 62.04 | 79.44 |
| GSMUA_Achr8P09330_001 | Banana | cytosol | 64.23 | 78.57 |
| Solyc01g009100.2.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 62.77 | 76.79 |
| AT3G18740.1 | Thale cress | cytosol | 61.31 | 75.0 |
| PGSC0003DMT400070814 | Potato | cytosol | 61.31 | 74.34 |
| Solyc04g072660.2.1 | Tomato | nucleus | 61.31 | 74.34 |
| CDX99322 | Canola | cytosol | 60.58 | 74.11 |
| CDY18539 | Canola | cytosol | 60.58 | 74.11 |
| CDY65281 | Canola | cytosol | 60.58 | 74.11 |
| CDX92266 | Canola | cytosol | 60.58 | 74.11 |
| CDX82330 | Canola | cytosol | 60.58 | 74.11 |
| CDX75983 | Canola | cytosol | 60.58 | 74.11 |
| Bra037566.1-P | Field mustard | cytosol | 60.58 | 74.11 |
| Bra022351.1-P | Field mustard | cytosol | 60.58 | 74.11 |
| Bra001719.1-P | Field mustard | cytosol | 60.58 | 74.11 |
| AT1G77940.1 | Thale cress | cytosol | 59.85 | 73.21 |
| CDX88400 | Canola | cytosol | 59.85 | 73.21 |
| CDX87493 | Canola | cytosol | 59.85 | 73.21 |
| CDX79241 | Canola | cytosol | 59.85 | 73.21 |
| CDX68035 | Canola | extracellular | 59.85 | 73.21 |
| Bra003662.1-P | Field mustard | cytosol | 59.85 | 73.21 |
| AT1G36240.1 | Thale cress | cytosol | 59.85 | 73.21 |
| KRH20440 | Soybean | cytosol, mitochondrion | 38.69 | 69.74 |
| CDY14643 | Canola | cytosol | 53.28 | 65.18 |
| HORVU7Hr1G110660.1 | Barley | plastid | 77.37 | 59.55 |
| GSMUA_Achr11P... | Banana | plastid | 62.77 | 59.31 |
Protein Annotations
| MapMan:17.1.2.1.31 | Gene3D:3.30.1330.30 | UniProt:A0A287G2L7 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:HORVU1Hr1G068640 | EnsemblPlants:HORVU1Hr1G068640.1 | InterPro:IPR029064 | InterPro:L30e-like |
| PFAM:PF01248 | ScanProsite:PS00709 | ScanProsite:PS00993 | PANTHER:PTHR11449 | PANTHER:PTHR11449:SF6 | InterPro:Ribosomal_L30e |
| InterPro:Ribosomal_L30e_CS | InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45 | SUPFAM:SSF55315 | UniParc:UPI000B466B06 | SEG:seg | : |
Description
No Description!
Coordinates
chrchr1H:-:481938187..481940361
Molecular Weight (calculated)
15375.8 Da
IEP (calculated)
10.689
GRAVY (calculated)
-0.585
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: HLRLRRRLPR SHPHPHARSP RPPDAMAPTK KAKKSGENIN NKLQLVMKSG KYTLGYKTVL KTLRSSKGKL IILANNCPPL RKSEIEYYAM LAKISVHHFH
101: GNNVDLGTAC GKYYRVCCLS ILDPGDSDII NTTTTTQ
101: GNNVDLGTAC GKYYRVCCLS ILDPGDSDII NTTTTTQ
001: MVAEKKAKKS HEGINSRLAL VMKSGKYTLG YKSVLKSLRS SKGKLILISS NCPPLRRSEI EYYAMLAKVG VHRYNGNNVD LGTACGKYFR VSCLSIVDPG
101: DSDIIKTLPG DQ
101: DSDIIKTLPG DQ
Arabidopsis Description
RPL30C60S ribosomal protein L30-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSA3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.