Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001719.1-P | Field mustard | cytosol | 96.43 | 96.43 |
| CDX82330 | Canola | cytosol | 96.43 | 96.43 |
| AT1G36240.1 | Thale cress | cytosol | 95.54 | 95.54 |
| AT1G77940.1 | Thale cress | cytosol | 93.75 | 93.75 |
| KRH01502 | Soybean | cytosol, endoplasmic reticulum, nucleus | 86.61 | 86.61 |
| KRH45193 | Soybean | cytosol | 85.71 | 85.71 |
| KRH31640 | Soybean | cytosol, nucleus | 85.71 | 85.71 |
| KRH69076 | Soybean | nucleus | 80.36 | 84.11 |
| Solyc04g072660.2.1 | Tomato | nucleus | 82.14 | 81.42 |
| PGSC0003DMT400070814 | Potato | cytosol | 82.14 | 81.42 |
| KRH20440 | Soybean | cytosol, mitochondrion | 53.57 | 78.95 |
| Os01t0276000-01 | Rice | cytosol, nucleus | 76.79 | 77.48 |
| Zm00001d014749_P001 | Maize | plastid | 76.79 | 76.79 |
| Zm00001d008245_P001 | Maize | plastid | 76.79 | 76.79 |
| EER90361 | Sorghum | cytosol | 76.79 | 76.79 |
| EES18421 | Sorghum | cytosol | 76.79 | 76.79 |
| EER90362 | Sorghum | cytosol | 75.89 | 75.89 |
| TraesCS1A01G307400.1 | Wheat | cytosol | 75.0 | 75.0 |
| TraesCS1D01G306800.1 | Wheat | cytosol | 75.0 | 75.0 |
| Os05t0490100-01 | Rice | cytosol, nucleus | 73.21 | 73.21 |
| Os01t0812800-01 | Rice | cytosol | 72.32 | 72.32 |
| HORVU0Hr1G023290.1 | Barley | cytosol | 71.43 | 70.8 |
| TraesCS3A01G187900.1 | Wheat | golgi, nucleus, unclear | 69.64 | 69.03 |
| TraesCS3D01G191800.1 | Wheat | cytosol | 69.64 | 69.03 |
| VIT_18s0001g04760.t01 | Wine grape | plastid | 84.82 | 61.69 |
| HORVU1Hr1G068640.1 | Barley | plasma membrane | 75.0 | 61.31 |
| TraesCS7D01G480000.2 | Wheat | mitochondrion | 62.5 | 59.32 |
| Zm00001d038535_P001 | Maize | cytosol | 68.75 | 54.23 |
| HORVU7Hr1G110660.1 | Barley | plastid | 70.54 | 44.38 |
Protein Annotations
| MapMan:17.1.2.1.31 | Gene3D:3.30.1330.30 | EntrezGene:821405 | UniProt:A0A178VBY8 | ProteinID:AEE76138.1 | EMBL:AF446880 |
| ArrayExpress:AT3G18740 | EnsemblPlantsGene:AT3G18740 | RefSeq:AT3G18740 | TAIR:AT3G18740 | RefSeq:AT3G18740-TAIR-G | EnsemblPlants:AT3G18740.1 |
| TAIR:AT3G18740.1 | EMBL:AY052710 | EMBL:AY088285 | ProteinID:BAB01800.1 | GO:GO:0002181 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 |
| GO:GO:0005886 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009506 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009620 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0019538 |
| GO:GO:0022625 | GO:GO:0022626 | GO:GO:0030529 | GO:GO:0042788 | InterPro:IPR029064 | InterPro:L30e-like |
| HAMAP:MF_00481 | RefSeq:NP_188504.1 | ProteinID:OAP03406.1 | PFAM:PF01248 | PO:PO:0000013 | PO:PO:0000036 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020121 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | ScanProsite:PS00709 | ScanProsite:PS00993 | PANTHER:PTHR11449 | PANTHER:PTHR11449:SF8 | UniProt:Q9LSA3 |
| InterPro:Ribosomal_L30e | InterPro:Ribosomal_L30e_CS | InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45 | SUPFAM:SSF55315 | UniParc:UPI0000000D6B | : |
Description
RPL30C60S ribosomal protein L30-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSA3]
Coordinates
chr3:+:6453303..6454018
Molecular Weight (calculated)
12280.1 Da
IEP (calculated)
10.212
GRAVY (calculated)
-0.266
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAEKKAKKS HEGINSRLAL VMKSGKYTLG YKSVLKSLRS SKGKLILISS NCPPLRRSEI EYYAMLAKVG VHRYNGNNVD LGTACGKYFR VSCLSIVDPG
101: DSDIIKTLPG DQ
101: DSDIIKTLPG DQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.