Factsheet for TraesCS3A01G187900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, nucleus

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, nucleus, unclear
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
unclear: 25769308
nucleus: 28628250

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 28628250 doi

T Bonnot, E Bancel, D Alvarez, M Davanture, J Boudet, M Pailloux, M Zivy, C Ravel, P Martre

LIMOS, CNRS, Université Blaise Pascal, Aubière, 63173, France., UMR GDEC, INRA, Université Clermont Auvergne, 5 chemin de Beaulieu, Clermont-Ferrand, 63039, France., UMR GQE, INRA, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Gif-sur-Yvette, 91190, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G191800.1	Wheat	cytosol	100.0	100.0
TraesCS3B01G217500.1	Wheat	cytosol	100.0	100.0
Zm00001d008245_P001	Maize	plastid	87.61	88.39
Os01t0276000-01	Rice	cytosol, nucleus	86.73	88.29
Zm00001d014749_P001	Maize	plastid	86.73	87.5
EER90361	Sorghum	cytosol	86.73	87.5
EER90362	Sorghum	cytosol	85.84	86.61
TraesCS1A01G307400.1	Wheat	cytosol	83.19	83.93
Solyc01g009100.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	77.88	78.57
Solyc11g071490.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, nucleus	76.99	77.68
GSMUA_AchrUn_...	Banana	cytosol	76.99	77.68
PGSC0003DMT400048132	Potato	cytosol	76.99	77.68
GSMUA_Achr8P09330_001	Banana	cytosol	76.11	76.79
KRH01502	Soybean	cytosol, endoplasmic reticulum, nucleus	76.11	76.79
KRH69076	Soybean	nucleus	72.57	76.64
KRH45193	Soybean	cytosol	75.22	75.89
KRH31640	Soybean	cytosol, nucleus	75.22	75.89
VIT_13s0064g00850.t01	Wine grape	cytosol	73.45	74.11
PGSC0003DMT400070814	Potato	cytosol	73.45	73.45
Solyc04g072660.2.1	Tomato	nucleus	73.45	73.45
AT1G77940.1	Thale cress	cytosol	70.8	71.43
CDY65281	Canola	cytosol	70.8	71.43
Bra001719.1-P	Field mustard	cytosol	70.8	71.43
Bra003662.1-P	Field mustard	cytosol	70.8	71.43
Bra022351.1-P	Field mustard	cytosol	70.8	71.43
Bra037566.1-P	Field mustard	cytosol	70.8	71.43
CDX68035	Canola	extracellular	70.8	71.43
CDX75983	Canola	cytosol	70.8	71.43
CDX79241	Canola	cytosol	70.8	71.43
CDX82330	Canola	cytosol	70.8	71.43
CDX87493	Canola	cytosol	70.8	71.43
CDX88400	Canola	cytosol	70.8	71.43
CDX92266	Canola	cytosol	70.8	71.43
CDX99322	Canola	cytosol	70.8	71.43
CDY18539	Canola	cytosol	70.8	71.43
AT1G36240.1	Thale cress	cytosol	69.91	70.54
AT3G18740.1	Thale cress	cytosol	69.03	69.64
CDY14643	Canola	cytosol	63.72	64.29
KRH20440	Soybean	cytosol, mitochondrion	41.59	61.84
GSMUA_Achr11P...	Banana	plastid	72.57	56.55

Protein Annotations

MapMan:17.1.2.1.31	Gene3D:3.30.1330.30	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR029064	InterPro:L30e-like
HAMAP:MF_00481	PFAM:PF01248	ScanProsite:PS00709	ScanProsite:PS00993	PANTHER:PTHR11449	PANTHER:PTHR11449:SF6
InterPro:Ribosomal_L30e	InterPro:Ribosomal_L30e_CS	InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45	SUPFAM:SSF55315	EnsemblPlantsGene:TraesCS3A01G187900	EnsemblPlants:TraesCS3A01G187900.1

Description

No Description!

Coordinates

chr3A:+:227364740..227366956

Molecular Weight (calculated)

12476.3 Da

IEP (calculated)

10.094

GRAVY (calculated)

-0.286

Length

113 amino acids

Sequence
(BLAST)

001: MVTSTKKTKK SGDNINNKLQ LVMKSGKYTL GYKTVLRTLR NSKAKLVILA NNCPPLRKSE IEYYAMLAKI TVHHYHGNNV DLGTACGKYF RVCCLSIIDP
101: GDSDIINATP AGQ

Best Arabidopsis Sequence Match ( AT1G77940.1 )
(BLAST)

001: MVTEKKTKKS HEGINSRLAL VMKSGKYTLG YKSVLKSLRG SKGKLILIST NCPPLRRSEI EYYAMLAKVG VHHYNGNNVD LGTACGKYFR VSCLSIVDPG
101: DSDIIKSIPG DQ

Arabidopsis Description

RPL30B60S ribosomal protein L30-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ19]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.