Factsheet for Zm00001d008245_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plastid: 23198870
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014749_P001	Maize	plastid	99.11	99.11
Os01t0276000-01	Rice	cytosol, nucleus	96.43	97.3
TraesCS3D01G191800.1	Wheat	cytosol	88.39	87.61
TraesCS3B01G217500.1	Wheat	cytosol	88.39	87.61
TraesCS3A01G187900.1	Wheat	golgi, nucleus, unclear	88.39	87.61
KRH01502	Soybean	cytosol, endoplasmic reticulum, nucleus	84.82	84.82
GSMUA_AchrUn_...	Banana	cytosol	84.82	84.82
KRH45193	Soybean	cytosol	83.93	83.93
KRH31640	Soybean	cytosol, nucleus	83.93	83.93
GSMUA_Achr8P09330_001	Banana	cytosol	83.93	83.93
PGSC0003DMT400048132	Potato	cytosol	83.93	83.93
Solyc11g071490.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, nucleus	83.93	83.93
Solyc01g009100.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	83.04	83.04
KRH69076	Soybean	nucleus	77.68	81.31
VIT_13s0064g00850.t01	Wine grape	cytosol	80.36	80.36
CDX92266	Canola	cytosol	77.68	77.68
CDX99322	Canola	cytosol	77.68	77.68
CDX82330	Canola	cytosol	77.68	77.68
CDY18539	Canola	cytosol	77.68	77.68
CDY65281	Canola	cytosol	77.68	77.68
CDX75983	Canola	cytosol	77.68	77.68
Bra037566.1-P	Field mustard	cytosol	77.68	77.68
Bra022351.1-P	Field mustard	cytosol	77.68	77.68
Bra001719.1-P	Field mustard	cytosol	77.68	77.68
AT1G77940.1	Thale cress	cytosol	76.79	76.79
CDX88400	Canola	cytosol	76.79	76.79
CDX87493	Canola	cytosol	76.79	76.79
CDX79241	Canola	cytosol	76.79	76.79
CDX68035	Canola	extracellular	76.79	76.79
Bra003662.1-P	Field mustard	cytosol	76.79	76.79
AT3G18740.1	Thale cress	cytosol	76.79	76.79
AT1G36240.1	Thale cress	cytosol	76.79	76.79
PGSC0003DMT400070814	Potato	cytosol	76.79	76.11
Solyc04g072660.2.1	Tomato	nucleus	76.79	76.11
KRH20440	Soybean	cytosol, mitochondrion	50.89	75.0
CDY14643	Canola	cytosol	68.75	68.75
GSMUA_Achr11P...	Banana	plastid	82.14	63.45
Zm00001d038535_P001	Maize	cytosol	80.36	63.38

Protein Annotations

MapMan:17.1.2.1.31	Gene3D:3.30.1330.30	EntrezGene:541668	EMBL:AF034949	ProteinID:AQK89295.1	UniProt:B6SJ19
EMBL:EU952734	EMBL:EU953522	EMBL:EU961125	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	InterPro:IPR029064	InterPro:L30e-like	HAMAP:MF_00481
UniProt:O48558	PFAM:PF01248	ScanProsite:PS00709	ScanProsite:PS00993	PANTHER:PTHR11449	PANTHER:PTHR11449:SF6
InterPro:Ribosomal_L30e	InterPro:Ribosomal_L30e_CS	InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45	SUPFAM:SSF55315	UniParc:UPI0000133EEC	EnsemblPlantsGene:Zm00001d008245
EnsemblPlants:Zm00001d008245_P001	EnsemblPlants:Zm00001d008245_T001	:	:	:	:

Description

ribosomal protein L30 ribosomal protein L30

Coordinates

chr8:+:2490496..2493628

Molecular Weight (calculated)

12491.3 Da

IEP (calculated)

10.137

GRAVY (calculated)

-0.318

Length

112 amino acids

Sequence
(BLAST)

001: MVATKKTKKS TDNINNKLQL VMKSGKYTLG YKTVLRTLRN SKSKLVIIAN NCPPLRKSEI EYYAMLAKVT VHHFHGNNVD LGTACGKYFR VCCLSIIDPG
101: DSDIIKTTPG EQ

Best Arabidopsis Sequence Match ( AT1G36240.1 )
(BLAST)

001: MVAAKKTKKS HEGINSRLAL VMKSGKYTLG YKSVLKSLRS SKGKLILISS NCPPLRRSEI EYYAMLAKVG VHHYNRNNVD LGTACGKYFR VSCLSIVDPG
101: DSDIIKSLPG DQ

Arabidopsis Description

RPL30APutative 60S ribosomal protein L30-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8F7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.