CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75983	Canola	cytosol	100.0	100.0
CDY65281	Canola	cytosol	100.0	100.0
CDX82330	Canola	cytosol	100.0	100.0
CDX99322	Canola	cytosol	100.0	100.0
CDX92266	Canola	cytosol	100.0	100.0
AT1G36240.1	Thale cress	cytosol	99.11	99.11
CDX68035	Canola	extracellular	97.32	97.32
CDX88400	Canola	cytosol	97.32	97.32
CDX87493	Canola	cytosol	97.32	97.32
CDX79241	Canola	cytosol	97.32	97.32
KRH01502	Soybean	cytosol, endoplasmic reticulum, nucleus	88.39	88.39
KRH45193	Soybean	cytosol	87.5	87.5
KRH31640	Soybean	cytosol, nucleus	87.5	87.5
CDY14643	Canola	cytosol	85.71	85.71
KRH69076	Soybean	nucleus	80.36	84.11
Solyc04g072660.2.1	Tomato	nucleus	83.93	83.19
PGSC0003DMT400070814	Potato	cytosol	83.93	83.19
Os01t0276000-01	Rice	cytosol, nucleus	78.57	79.28
KRH20440	Soybean	cytosol, mitochondrion	53.57	78.95
Zm00001d014749_P001	Maize	plastid	78.57	78.57
EER90361	Sorghum	cytosol	78.57	78.57
EER90362	Sorghum	cytosol	77.68	77.68
Zm00001d008245_P001	Maize	plastid	77.68	77.68
EES18421	Sorghum	cytosol	76.79	76.79
Os01t0812800-01	Rice	cytosol	74.11	74.11
TraesCS1A01G307400.1	Wheat	cytosol	74.11	74.11
TraesCS1D01G306800.1	Wheat	cytosol	74.11	74.11
Os05t0490100-01	Rice	cytosol, nucleus	72.32	72.32
HORVU0Hr1G023290.1	Barley	cytosol	71.43	70.8
TraesCS3A01G187900.1	Wheat	golgi, nucleus, unclear	71.43	70.8
TraesCS3D01G191800.1	Wheat	cytosol	71.43	70.8
VIT_18s0001g04760.t01	Wine grape	plastid	85.71	62.34
HORVU1Hr1G068640.1	Barley	plasma membrane	74.11	60.58
TraesCS7D01G480000.2	Wheat	mitochondrion	62.5	59.32
Zm00001d038535_P001	Maize	cytosol	69.64	54.93
HORVU7Hr1G110660.1	Barley	plastid	71.43	44.94

Protein Annotations

MapMan:17.1.2.1.31	Gene3D:3.30.1330.30	GO:A0A078CLN7	UniProt:A0A078CLN7	EnsemblPlants:CDY18539	ProteinID:CDY18539
ProteinID:CDY18539.1	ProteinID:CDY65281.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00005567001	InterPro:IPR029064	InterPro:L30e-like	HAMAP:MF_00481	PFAM:PF01248
ScanProsite:PS00709	ScanProsite:PS00993	PANTHER:PTHR11449	PANTHER:PTHR11449:SF8	InterPro:Ribosomal_L30e	InterPro:Ribosomal_L30e_CS
InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45	SUPFAM:SSF55315	UniParc:UPI0002540484	:	:	:

Description

BnaA01g26560DBnaA01g26560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078CLN7]

Coordinates

chrLK032086:+:393335..394045

Molecular Weight (calculated)

12219.0 Da

IEP (calculated)

10.212

GRAVY (calculated)

-0.230

Length

112 amino acids

Sequence
(BLAST)

001: MVAAKKTKKS HEGINSRLAL VMKSGKYTLG YKSVLKSLRS SKGKLILISS NCPPLRRSEI EYYAMLAKVG VHHYNGNNVD LGTACGKYFR VSCLSIVDPG
101: DSDIIKSLPG DQ

Best Arabidopsis Sequence Match ( AT1G36240.1 )
(BLAST)

001: MVAAKKTKKS HEGINSRLAL VMKSGKYTLG YKSVLKSLRS SKGKLILISS NCPPLRRSEI EYYAMLAKVG VHHYNRNNVD LGTACGKYFR VSCLSIVDPG
101: DSDIIKSLPG DQ

Arabidopsis Description

RPL30APutative 60S ribosomal protein L30-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8F7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.