Factsheet for Os05t0490100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 19621931
cytosol: 19685898
nucleus: 26035336
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G399800.1	Wheat	cytosol, golgi, plastid, unclear	90.18	91.82
EES18421	Sorghum	cytosol	91.07	91.07
TraesCS1D01G306800.1	Wheat	cytosol	91.07	91.07
TraesCS1B01G318200.1	Wheat	cytosol	91.07	91.07
TraesCS1A01G307400.1	Wheat	cytosol	91.07	91.07
Os01t0276000-01	Rice	cytosol, nucleus	85.71	86.49
HORVU0Hr1G023290.1	Barley	cytosol	85.71	84.96
Os01t0812800-01	Rice	cytosol	83.04	83.04
KRH69076	Soybean	nucleus	76.79	80.37
PGSC0003DMT400048132	Potato	cytosol	80.36	80.36
KRH01502	Soybean	cytosol, endoplasmic reticulum, nucleus	80.36	80.36
Solyc11g071490.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, nucleus	80.36	80.36
KRH45193	Soybean	cytosol	79.46	79.46
KRH31640	Soybean	cytosol, nucleus	79.46	79.46
GSMUA_AchrUn_...	Banana	cytosol	79.46	79.46
VIT_13s0064g00850.t01	Wine grape	cytosol	79.46	79.46
GSMUA_Achr8P09330_001	Banana	cytosol	78.57	78.57
Solyc01g009100.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	75.89	75.89
HORVU1Hr1G068640.1	Barley	plasma membrane	91.96	75.18
PGSC0003DMT400070814	Potato	cytosol	75.0	74.34
Solyc04g072660.2.1	Tomato	nucleus	75.0	74.34
AT3G18740.1	Thale cress	cytosol	73.21	73.21
AT1G77940.1	Thale cress	cytosol	72.32	72.32
CDY65281	Canola	cytosol	72.32	72.32
Bra001719.1-P	Field mustard	cytosol	72.32	72.32
Bra003662.1-P	Field mustard	cytosol	72.32	72.32
Bra022351.1-P	Field mustard	cytosol	72.32	72.32
Bra037566.1-P	Field mustard	cytosol	72.32	72.32
CDX68035	Canola	extracellular	72.32	72.32
CDX75983	Canola	cytosol	72.32	72.32
CDX79241	Canola	cytosol	72.32	72.32
CDX82330	Canola	cytosol	72.32	72.32
CDX87493	Canola	cytosol	72.32	72.32
CDX88400	Canola	cytosol	72.32	72.32
CDX92266	Canola	cytosol	72.32	72.32
CDX99322	Canola	cytosol	72.32	72.32
CDY18539	Canola	cytosol	72.32	72.32
AT1G36240.1	Thale cress	cytosol	71.43	71.43
TraesCS7D01G480000.2	Wheat	mitochondrion	72.32	68.64
KRH20440	Soybean	cytosol, mitochondrion	46.43	68.42
Zm00001d038535_P001	Maize	cytosol	85.71	67.61
CDY14643	Canola	cytosol	65.18	65.18
GSMUA_Achr11P...	Banana	plastid	75.89	58.62

Protein Annotations

MapMan:17.1.2.1.31	Gene3D:3.30.1330.30	EntrezGene:4339162	ProteinID:AAT69635.1	ProteinID:AAT77294.1	EMBL:AK120984
ProteinID:BAF17811.1	ProteinID:BAS94649.1	ProteinID:EEE64184.1	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:IPR029064
InterPro:L30e-like	EnsemblPlantsGene:Os05g0490100	EnsemblPlants:Os05t0490100-01	PFAM:PF01248	ScanProsite:PS00709	ScanProsite:PS00993
PANTHER:PTHR11449	PANTHER:PTHR11449:SF6	UniProt:Q6F331	InterPro:Ribosomal_L30e	InterPro:Ribosomal_L30e_CS	InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45
SUPFAM:SSF55315	UniParc:UPI00003BF575	RefSeq:XP_015638739.1	:	:	:

Description

Similar to 60S ribosomal protein L30. (Os05t0490100-01)

Coordinates

chr5:+:24078058..24079845

Molecular Weight (calculated)

12361.1 Da

IEP (calculated)

10.074

GRAVY (calculated)

-0.352

Length

112 amino acids

Sequence
(BLAST)

001: MAPTKKAKKS TDNINNKLQL VMKSGKYTLG YKTVLKTLRN SKGKLIILAN NCPPLRKSEI EYYAMLGKVS VHHFHGNNVD LGTACGKYYR VCCLSIIDPG
101: DSDIINTTPA SQ

Best Arabidopsis Sequence Match ( AT3G18740.1 )
(BLAST)

001: MVAEKKAKKS HEGINSRLAL VMKSGKYTLG YKSVLKSLRS SKGKLILISS NCPPLRRSEI EYYAMLAKVG VHRYNGNNVD LGTACGKYFR VSCLSIVDPG
101: DSDIIKTLPG DQ

Arabidopsis Description

RPL30C60S ribosomal protein L30-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSA3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.